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Report for Sequence Feature Glyma02g01910

Feature Type:gene_model
Chromosome:Gm02
Start:1381401
stop:1385719
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g01910
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G16850AT Annotation by Michelle Graham. TAIR10: Pectin lyase-like superfamily protein | chr3:5748692-5750981 FORWARD LENGTH=455 SoyBaseE_val: 0ISS
GO:0005975GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process SoyBaseN/AISS
GO:0006816GO-bp Annotation by Michelle Graham. GO Biological Process: calcium ion transport SoyBaseN/AISS
GO:0007030GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi organization SoyBaseN/AISS
GO:0009637GO-bp Annotation by Michelle Graham. GO Biological Process: response to blue light SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0010155GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of proton transport SoyBaseN/AISS
GO:0046777GO-bp Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation SoyBaseN/AISS
GO:0048767GO-bp Annotation by Michelle Graham. GO Biological Process: root hair elongation SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0009505GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall SoyBaseN/AISS
GO:0004650GO-mf Annotation by Michelle Graham. GO Molecular Function: polygalacturonase activity SoyBaseN/AISS
PF00295PFAM Glycosyl hydrolases family 28 JGI ISS
UniRef100_B9RTB3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Polygalacturonase, putative n=1 Tax=Ricinus communis RepID=B9RTB3_RICCO SoyBaseE_val: 0ISS
UniRef100_I1JBJ1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JBJ1_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g01910
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g01910
ParalogEvidenceComments
Glyma10g02030 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g01910 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g015600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g01910
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g01910
>Glyma02g01910.1   sequence type=CDS   gene model=Glyma02g01910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTGCGGAGCTGGCATTTTCCTTTATAGCCGTCGCTTTCTACTACCTCCCCCCGTTTGTTTTTATTGTTTCCAGTACTTGCTTGGCATTATATACGAAATAGCTCTTGCTCTCTTCCTCTTGTGCTGTCCTTATGTTCTTCTTCTAGTTCTTCTACCCTCTTCTTCACTCTTGTTCCATCACTGCTTTCAGAGCTTCCTATTTCTCTTTGAAGAAGAGGGGCACAGACCCATGAAGAGGCTCGTAACTGTGCTTTTACTCATAATATTAAGCACTGCTCTGGAAGGCAATGGAGAAGATGATCATGAACCGTGTAAAGAAAAAGTGTTGGATCCTAGGCCTCACAGCGTGTCAATCTTAGAGTTTGGGGCAGTTGGAGATGGAAAAACACTGAACACAGTTGCATTCCAAAATGCAGTTTTTTATGCCAAGTCATTTGCTGACAAAGGTGGGGCTAAACTATATGTTCCATCTGGCAAGTGGCTCACTGGAAGTTTTAACCTTACCAGCCACCTCACTCTCTTTCTTGAAAGAGGCGCAACCATCATCGCATCACAGGATTATGCACACTGGACTGCAATGGATCCCCTACCCTCCTATGGTCGAGGTATTGATGTTCCTGTTGGGAGATACCGCAGTTTGATTTATGGACAGAACTTAAGTGATGTGGTGATTACAGGTGATAATGGAATTATTGATGGGCAGGGTTCTGTTTGGTGGGACCTAATCAGTACTCATTCCTTAAATTATAGCCGACCACATATTATAGAACTTGTTGGTTCTGATAATATCATAATCTCAAATTTGACATTTTTAAACTCTCCTGCTTGGAGCATCCATCCCGTATATTGCAGTAACATTCAAATCCAGAAGATAACAGTTCAGGCACCAACCAAGTTCCCTTACACAAGCGGTATAGTTCCAGATTCTTCTGAGCATGTTTGCATTGACAACTGCAATATTAGCACTGGTCATGATGCAATTGTGCTGAAGAGTGGTTGGGATGAATATGGAGTTGCCTATGGCAAACCAACCTCAAACGTCCACATCAGGGGTGTTTATCTACAATCGTCATCTGGTGCTGGCCTAGCGTTTGGAAGTGAGATGTCTGGAGGCATATCTGATATAATTGCAGAGCAGCTCCATATTACCAACTCAACTTTTGGCATTGAACTGAAGACAACTAGGGGTAGAGGTGGCTACATGAAAAACATTTTCATTTCTGACGCAAAATTGGAAAATATTTACTTGGGTATCAGCATGACGGGAAGTTCTGGCTCCCATCCAGATGACAAGTATGATCCTAATGCAGTTCCGGATGTTGGTAATGTTACTTTTGAGAATGTGATTGGTGCAAATATTGCTATTGCTGGGAATTTTTCAGGAATAGTTGATTCGCCTTTCACTCCTATCTGTCTTTCAAACGTGACTTTTTCTACCAGTTCCGAGTCATCTCCTTCATGGTTTTGTTCTAACGTAATGGGAATCTCCAAGGAGGTGTTTCCTGAGCCATGTCCTGATCTGCAGAACACGTATTCAAACTTTTCCTCTTGCTTTTCTTCCCTACATCCGTCATCTAGTTTTGTCTCAAGCGCATGA
Predicted protein sequences of Glyma02g01910
>Glyma02g01910.1   sequence type=predicted peptide   gene model=Glyma02g01910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKCGAGIFLYSRRFLLPPPVCFYCFQYLLGIIYEIALALFLLCCPYVLLLVLLPSSSLLFHHCFQSFLFLFEEEGHRPMKRLVTVLLLIILSTALEGNGEDDHEPCKEKVLDPRPHSVSILEFGAVGDGKTLNTVAFQNAVFYAKSFADKGGAKLYVPSGKWLTGSFNLTSHLTLFLERGATIIASQDYAHWTAMDPLPSYGRGIDVPVGRYRSLIYGQNLSDVVITGDNGIIDGQGSVWWDLISTHSLNYSRPHIIELVGSDNIIISNLTFLNSPAWSIHPVYCSNIQIQKITVQAPTKFPYTSGIVPDSSEHVCIDNCNISTGHDAIVLKSGWDEYGVAYGKPTSNVHIRGVYLQSSSGAGLAFGSEMSGGISDIIAEQLHITNSTFGIELKTTRGRGGYMKNIFISDAKLENIYLGISMTGSSGSHPDDKYDPNAVPDVGNVTFENVIGANIAIAGNFSGIVDSPFTPICLSNVTFSTSSESSPSWFCSNVMGISKEVFPEPCPDLQNTYSNFSSCFSSLHPSSSFVSSA*






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