Glyma02g01900 - SoyBase

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Report for Sequence Feature Glyma02g01900

Feature Type:	gene_model
Chromosome:	Gm02
Start:	1370635
stop:	1377559
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g01900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G47500	AT	Annotation by Michelle Graham. TAIR10: P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain \| chr2:19493247-19497882 FORWARD LENGTH=983	SoyBase	E_val: 0	ISS
GO:0007018	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule-based movement	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003777	GO-mf	Annotation by Michelle Graham. GO Molecular Function: microtubule motor activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG0239	KOG	Kinesin (KAR3 subfamily)	JGI		ISS
PTHR24115	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24115:SF135	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00225	PFAM	Kinesin motor domain	JGI		ISS
PF00307	PFAM	Calponin homology (CH) domain	JGI		ISS
UniRef100_G7IEJ0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Kinesin-4 n=1 Tax=Medicago truncatula RepID=G7IEJ0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002337A80	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337A80 related cluster n=1 Tax=unknown RepID=UPI0002337A80	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g01900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g01900

Paralog	Evidence	Comments
Glyma10g02020	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g01900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g015500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g01900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g01900

Limit To All Plant Sequences

>Glyma02g01900.1   sequence type=CDS   gene model=Glyma02g01900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGCATTGTCGTTCTCAGTGGCATCCGTGGTGGAAGATGTGCTTCAACAACACGGTACTCGCCTCAAAGATCTTGACTTGGAATCTAGAAAAGCAGAAGAAGCTGCATTCAGAAGATATGAAGCAGCAGGGTGGCTGAGGAAAATGGTTGGAGTTGTTGCAGCTAAAGATTTGCCAGCAGAGCCATCTGAGGAAGAGTTTAGGCTTGGTTTGAGAAGTGGGATCATTCTCTGTAATGTTCTTAATAAAGTTCAACCTGGTGCTGTACCCAGGGTTGTGGAGAGTCCTATTGATTCTGCACTAGTCCCCGATGGAGCACCCTTATCCGCATTTCAGTATTTTGAAAATGTGAGGAACTTTCTGCTGGCTGTGCAGGAAATTGGAGTTCCTACCTTTGAGGCATCTGATCTGGAACAAGGAGGAAAATCAGCCAGGATTGTGAACAGCGTCTTAGCTCTTAAGTCCTATAGTGAATGGAAACAGACTGGGGGTAATGGTGTGTGGAAAATTGGAGGAACTATCAAACCCACTGTCTCTTCAAAATCTTTTGTGAGAAAAAACTCTGAGCCATTTACTAATTCCCTGTCAAGGAACTCGTCCATCAATGAAAAATCCATGACTGCTCTTACCTCTGATGTCGAGTCTAATAAAATGTCTGGGTCTCACTCTTTGAGTATGCTTGTTCGTGCAGTACTATTAGATAAGAAGCCTGAAGAAGTTCCATTGTTAGTTGAATCAGTCTTGAATAAGGTCGTAGAGGAGTTTGAGCATCGCATTGCCAGCCAGGGTGAACAGACAAAAATTTCAAGAGGTGCTGTGTTGCTAGGCAATGGATCTGTATCAAAGTTTGTTATGGCAGATAAAAAGATGGATAACAAGATTCCTATGGTAACAAAGAAAGAAAGATTGCTCCATAAAAACTTTGTCGATGATGAGGAATCGAAAAGACAACTTCTGAAGAAGCAAATGCTCTTTGATCAACAGCAAAGAGATATTCAAGAACTAAAGCATACAATTCACACCACCAAAGCTGGTATGCAGTTCCTGCAAATGAAGTTTCATGAGGAGTTCTCCAATCTAGGCAGGCATGTTCATGGCTTAGCTCATGCTGCTTCTGGATATAATAGAGTTCTTGAAGAAAATCGCAAACTATACAATCAAGTTCAGGATCTTAAGGGAAGTATAAGGGTGTATTGTCGAGTAAGACCCTTCTTATCTGCACAAGCAAATTATTCAAGCACAGTGAATAATATAGAAGATGGAACTATCACAATTAATATTCCTTCAAAGAACGGGAAAGGTCACAGATCCTTTAACTTCAACAAAGTCTTTGGACCATCAGCATCCCAAGCGGAGGTCTTCTCTGATATGCAGCCACTCATTAGGTCTGTTCTTGATGGTTTCAATGTTTGCATATTTGCTTATGGCCAAACAGGATCAGGAAAAACTCACACTATGACTGGACCAAAAGAGATCACCGAGAAAAGCAGAGGTGTAAATTACAGGGCTCTAAGTGATTTGTTTCTTACAGCAGATCAAAGAAGAGACACTTTTTGCTATGACGTGTCTGTTCAAATGATTGAGATTTATAATGAGCAAGTCAGAGATCTATTGGTTACTGATGGATCAAACAAAAGATTAGAAATTCGTAGTAATTCTCAGAGAGGGCTCAGCGTACCAGATGCATGCCTAGTCCCAGTTTCATCAACAAAAGATGTTATTGAACTAATGAACCTGGGCCAAAGGAATCGTGCAGTCGGAGCAACGGCACTTAATGATCGTAGTAGTCGATCACACAGTTGCTTGACTGTTCATGTTCAAGGAAGAGACTTGACATCTGGAACTATTCTACGTGGATGCATGCATTTGGTTGACTTGGCAGGAAGTGAGAGAGTTGACAAATCTGAGGCCACAGGAGATAGGCTGAAAGAAGCACAGCACATTAACAAATCTCTTTCAGCTTTGGGTGATGTCATTGCTTCCCTTGCTCAGAAAAACCAACATGTCCCTTACAGAAATAGCAAACTCACACAGTTACTCCAGGATTCACTCGGAGGACAGGCCAAGACACTAATGTTTGTTCACATAAGTCCAGAGGTTGATGCTGTTGGAGAAACAATTAGCACCTTAAAATTTGCAGAAAGAGTTGCCACAGTTGAACTTGGTGCTGCTCGAGTGAACAAGGATGGGGCAGATGTCAAAGAGCTCAAAGAACAGATAGCCTGCCTCAAGGCAGCATTGGCAAGAAAGGAAGGTGAATCAGAACATTCTTTATCAGGCAGCTCTGAAAAATATAGGACAATGGCTAGTGAGCTATCACCTTATCATGCAAACCAACAGGGTGCTGATATTGTGAGCCCAGGGTGCCGGCAACCAATGCTTGATGTAGGCAATATAGAGCTTCACAGTAGTACCACATTGAGACAAAAAACTCAGAGCTATGATTTTGATGAGATGTCAACGAATTCACCGCCCTGGCCCCCGGTGAATAATCCTAGACAACTCTATGGGGATGATGACAGAGAAACTGGCTCAGGAGAGTGGGTAGATAAAGTCATGGTAAACAAGCAAGATGCTAATAAAACTGAGAACATCTTAGGGTGTTGGGAAGCAGACAGTGGGAACTTATCCGATGTCTTTTATCAAAAATATCTCCAAGGTTCTTCCAAAATGTTCTCAGAACGATCCTACAACATGTTCATGGGAGGCAACAACCAGTTTAACGTTGCTGGTTCAGATGACATGGATGATCTTGATGATACAACCACTGATTCCTCGGAACCTGACTTGCTTTGGCAATTTAATCATTCCAAACTTACCAGCATAGCCAATGGCAACGGATCAAAGGCTAGGAGACCTGTCTCAAAGCCCACAAATAGCCCAGTATTGAGCAAGAATAATGTTCATTCTTCTCTTGGTCCTTCACCTTCAAGGAAACAATCAAACAGTGTCTCACATCGAACAGCAAGACATCCAGCTCCAGTTGACATGAAACGTAAAACTGGGAGTAGAAAGTAA

Predicted protein sequences of Glyma02g01900

Limit To All Plant Sequences

>Glyma02g01900.1   sequence type=predicted peptide   gene model=Glyma02g01900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAALSFSVASVVEDVLQQHGTRLKDLDLESRKAEEAAFRRYEAAGWLRKMVGVVAAKDLPAEPSEEEFRLGLRSGIILCNVLNKVQPGAVPRVVESPIDSALVPDGAPLSAFQYFENVRNFLLAVQEIGVPTFEASDLEQGGKSARIVNSVLALKSYSEWKQTGGNGVWKIGGTIKPTVSSKSFVRKNSEPFTNSLSRNSSINEKSMTALTSDVESNKMSGSHSLSMLVRAVLLDKKPEEVPLLVESVLNKVVEEFEHRIASQGEQTKISRGAVLLGNGSVSKFVMADKKMDNKIPMVTKKERLLHKNFVDDEESKRQLLKKQMLFDQQQRDIQELKHTIHTTKAGMQFLQMKFHEEFSNLGRHVHGLAHAASGYNRVLEENRKLYNQVQDLKGSIRVYCRVRPFLSAQANYSSTVNNIEDGTITINIPSKNGKGHRSFNFNKVFGPSASQAEVFSDMQPLIRSVLDGFNVCIFAYGQTGSGKTHTMTGPKEITEKSRGVNYRALSDLFLTADQRRDTFCYDVSVQMIEIYNEQVRDLLVTDGSNKRLEIRSNSQRGLSVPDACLVPVSSTKDVIELMNLGQRNRAVGATALNDRSSRSHSCLTVHVQGRDLTSGTILRGCMHLVDLAGSERVDKSEATGDRLKEAQHINKSLSALGDVIASLAQKNQHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEVDAVGETISTLKFAERVATVELGAARVNKDGADVKELKEQIACLKAALARKEGESEHSLSGSSEKYRTMASELSPYHANQQGADIVSPGCRQPMLDVGNIELHSSTTLRQKTQSYDFDEMSTNSPPWPPVNNPRQLYGDDDRETGSGEWVDKVMVNKQDANKTENILGCWEADSGNLSDVFYQKYLQGSSKMFSERSYNMFMGGNNQFNVAGSDDMDDLDDTTTDSSEPDLLWQFNHSKLTSIANGNGSKARRPVSKPTNSPVLSKNNVHSSLGPSPSRKQSNSVSHRTARHPAPVDMKRKTGSRK*

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