SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G62660 | AT | Annotation by Michelle Graham. TAIR10: galacturonosyltransferase-like 7 | chr3:23173419-23174504 FORWARD LENGTH=361 | SoyBase | E_val: 0 | ISS |
| GO:0016051 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate biosynthetic process | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| GO:0016758 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups | SoyBase | N/A | ISS |
| GO:0047262 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: polygalacturonate 4-alpha-galacturonosyltransferase activity | SoyBase | N/A | ISS |
| PTHR13778 | Panther | GLYCOSYL TRANSFERASE-RELATED | JGI | ISS | |
| PF01501 | PFAM | Glycosyl transferase family 8 | JGI | ISS | |
| UniRef100_B9GSE6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glycosyltransferase, CAZy family GT8 n=1 Tax=Populus trichocarpa RepID=B9GSE6_POPTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000189D46E | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000189D46E related cluster n=1 Tax=unknown RepID=UPI000189D46E | SoyBase | E_val: 0 | ISS |
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Glyma02g01880 not represented in the dataset |
Glyma02g01880 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g01960 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g015300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g01880.2 sequence type=transcript gene model=Glyma02g01880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCCTCTTAAAAGTTATAATTGTGTTCTGGGGCCGTGAAACATTTCTATGGTGGAAATTGCTATGCTATGCTAAGCTAAGCTGGAAAGAAAAAAGGCCCTCTGAGTGAGTGAGAGTGTGTGGTTAAAGAGGAGAGGAAGAAGAGAAGAGGAGGCGGTGCGCACCTTAGCATGGATTCCTCTCCGTCATCTTCTCTCTCCTCTCTCGCTTCGTCCCCACGGCACCATCGTCCTCTCTCCAATTGAGAAAGGCACCGATTCCCATTCTCATTCTCACTCTGGCTGACATAAAGGCAACCCTTGCCTCTCTCTCTTCCATCGATTTCAATTTCTACGGCAACAGGAAAAGCAAGAAGAAGAAGGCCAGGCTCTGCTTTGGTTTCCGCCGCGTCAAAATGCTGTGGCTGATGAGATTCTCGGGCTTCTTCTCCGCCGCAATGCTCGTCATTCTCCTCTCCCCCTCCCTCCAATCCTTCCACCCCGCCGAAGCCATCCGCTCCTCCCACCATCTCGACGGCCTCCTCCGCCTCCCTCCGCCGCGCCTCTCCTTCCGCCCCGCCGCTCCATTCCGCAATGCCGCCGACGGTAAATGCGCCTCCTCCGTTCCCACCTCCGTCTGCGACCCCTCCCTCGTCCACGTGGCCATCACCCTCGACGTGGAGTACCTCCGCGGCTCCATCGCCGCCGTCCACTCCATCCTCCAACACTCCCAGTGCCCGGAGAACATCTTCTTCCACTTCCTCGTCTCCGAAACCAACCTCGAATCCCTCGTCAAATCCACCTTCCCGCAATTGAACTTCAAGGTCTATTACTTCGATCCAGAGATCGTCCGCAACCTGATCTCCACCTCCGTCAGACAAGCCCTCGAACAACCCCTCAACTACGCCAGAAATTACCTCGCTGACCTCCTCGAACCCTGCGTCGAGAGGGTTATATACCTCGACTCCGATCTGGTTCTCGTCGACGACATTGCCAAGCTCTGGAGCACCAGTCTAGGTTCTAGAACCATTGGCGCCCCCGAGTACTGCCACGCCAACTTCACCAAGTACTTCACCGCAGGGTTCTGGTCGGACATGCGCTTCGCCAGCGCGTTCGCGGGGCGGAGGCCGTGCTATTTCAACACGGGCGTGATGGTCATAGATCTGGTGCGGTGGCGGAAAATCGGGTACAGCAAGAGGATAGAGAGGTGGATGGAGATTCAGAAGAACGATCGGATCTACGAGCTGGGTTCTTTGCCGCCGTTTCTGTTGGTGTTCGCGGGACGCGTGGCGCCAATTGAGCACAGGTGGAACCAGCATGGGTTGGGTGGCGATAACGTGAAGGGGAGTTGCCGGGACCTGCACGCTGGGCCTGTGAGCCTGTTGCATTGGTCCGGTAGTGGCAAGCCCTGGACAAGATTGGACTCCAAGCACCCCTGTCCTCTTGATGCACTTTGGGCTCCTTATGATTTGTACGGACACGCTCACTGATTAGCCTTTGCCTTCTCCCTGCTCGCCGGTGTCTGCTTGATGAGAGGGTGCGGGGACCGATTTCTCTCACTCTCACACGTAGTCAGTTACTTGGACTCTTCTATGTAGTTCGGCCCTCCATGTGTTCGTTATGTGCTTTTTTAAATTTAATTTATTTCTTCAAATAGGTATTCGAGAACAGAATAGAAGAAGCCATTGTGAATAGTACATGTGATCGGTTAGAATGGAGGCTATCCTTTAATTGTTTCTTTTTTTTTTTTTTTGTCACAAATTGTATATGATTTAGATTAGGTTGTGAATAATCTATCCAAATTATGCATATGTGAGCAACGACGTTGGCTTTTAGCATTGCTACTCTAGCTGGGGCTATATATACTTGGATTATGAATTAAACTATGGAAAAAAAGTTCTATTGTCGGGTTTAAGATAATATACTACGATTAAGACGTAGCAACGAATGCTTGGGCGGGCCTATGATACATTGTATGGGCAAATGCTGA
>Glyma02g01880.1 sequence type=CDS gene model=Glyma02g01880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTGTGGCTGATGAGATTCTCGGGCTTCTTCTCCGCCGCAATGCTCGTCATTCTCCTCTCCCCCTCCCTCCAATCCTTCCACCCCGCCGAAGCCATCCGCTCCTCCCACCATCTCGACGGCCTCCTCCGCCTCCCTCCGCCGCGCCTCTCCTTCCGCCCCGCCGCTCCATTCCGCAATGCCGCCGACGGTAAATGCGCCTCCTCCGTTCCCACCTCCGTCTGCGACCCCTCCCTCGTCCACGTGGCCATCACCCTCGACGTGGAGTACCTCCGCGGCTCCATCGCCGCCGTCCACTCCATCCTCCAACACTCCCAGTGCCCGGAGAACATCTTCTTCCACTTCCTCGTCTCCGAAACCAACCTCGAATCCCTCGTCAAATCCACCTTCCCGCAATTGAACTTCAAGGTCTATTACTTCGATCCAGAGATCGTCCGCAACCTGATCTCCACCTCCGTCAGACAAGCCCTCGAACAACCCCTCAACTACGCCAGAAATTACCTCGCTGACCTCCTCGAACCCTGCGTCGAGAGGGTTATATACCTCGACTCCGATCTGGTTCTCGTCGACGACATTGCCAAGCTCTGGAGCACCAGTCTAGGTTCTAGAACCATTGGCGCCCCCGAGTACTGCCACGCCAACTTCACCAAGTACTTCACCGCAGGGTTCTGGTCGGACATGCGCTTCGCCAGCGCGTTCGCGGGGCGGAGGCCGTGCTATTTCAACACGGGCGTGATGGTCATAGATCTGGTGCGGTGGCGGAAAATCGGGTACAGCAAGAGGATAGAGAGGTGGATGGAGATTCAGAAGAACGATCGGATCTACGAGCTGGGTTCTTTGCCGCCGTTTCTGTTGGTGTTCGCGGGACGCGTGGCGCCAATTGAGCACAGGTGGAACCAGCATGGGTTGGGTGGCGATAACGTGAAGGGGAGTTGCCGGGACCTGCACGCTGGGCCTGTGAGCCTGTTGCATTGGTCCGGTAGTGGCAAGCCCTGGACAAGATTGGACTCCAAGCACCCCTGTCCTCTTGATGCACTTTGGGCTCCTTATGATTTGTACGGACACGCTCACTGA >Glyma02g01880.2 sequence type=CDS gene model=Glyma02g01880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTGTGGCTGATGAGATTCTCGGGCTTCTTCTCCGCCGCAATGCTCGTCATTCTCCTCTCCCCCTCCCTCCAATCCTTCCACCCCGCCGAAGCCATCCGCTCCTCCCACCATCTCGACGGCCTCCTCCGCCTCCCTCCGCCGCGCCTCTCCTTCCGCCCCGCCGCTCCATTCCGCAATGCCGCCGACGGTAAATGCGCCTCCTCCGTTCCCACCTCCGTCTGCGACCCCTCCCTCGTCCACGTGGCCATCACCCTCGACGTGGAGTACCTCCGCGGCTCCATCGCCGCCGTCCACTCCATCCTCCAACACTCCCAGTGCCCGGAGAACATCTTCTTCCACTTCCTCGTCTCCGAAACCAACCTCGAATCCCTCGTCAAATCCACCTTCCCGCAATTGAACTTCAAGGTCTATTACTTCGATCCAGAGATCGTCCGCAACCTGATCTCCACCTCCGTCAGACAAGCCCTCGAACAACCCCTCAACTACGCCAGAAATTACCTCGCTGACCTCCTCGAACCCTGCGTCGAGAGGGTTATATACCTCGACTCCGATCTGGTTCTCGTCGACGACATTGCCAAGCTCTGGAGCACCAGTCTAGGTTCTAGAACCATTGGCGCCCCCGAGTACTGCCACGCCAACTTCACCAAGTACTTCACCGCAGGGTTCTGGTCGGACATGCGCTTCGCCAGCGCGTTCGCGGGGCGGAGGCCGTGCTATTTCAACACGGGCGTGATGGTCATAGATCTGGTGCGGTGGCGGAAAATCGGGTACAGCAAGAGGATAGAGAGGTGGATGGAGATTCAGAAGAACGATCGGATCTACGAGCTGGGTTCTTTGCCGCCGTTTCTGTTGGTGTTCGCGGGACGCGTGGCGCCAATTGAGCACAGGTGGAACCAGCATGGGTTGGGTGGCGATAACGTGAAGGGGAGTTGCCGGGACCTGCACGCTGGGCCTGTGAGCCTGTTGCATTGGTCCGGTAGTGGCAAGCCCTGGACAAGATTGGACTCCAAGCACCCCTGTCCTCTTGATGCACTTTGGGCTCCTTATGATTTGTACGGACACGCTCACTGA
>Glyma02g01880.1 sequence type=predicted peptide gene model=Glyma02g01880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLWLMRFSGFFSAAMLVILLSPSLQSFHPAEAIRSSHHLDGLLRLPPPRLSFRPAAPFRNAADGKCASSVPTSVCDPSLVHVAITLDVEYLRGSIAAVHSILQHSQCPENIFFHFLVSETNLESLVKSTFPQLNFKVYYFDPEIVRNLISTSVRQALEQPLNYARNYLADLLEPCVERVIYLDSDLVLVDDIAKLWSTSLGSRTIGAPEYCHANFTKYFTAGFWSDMRFASAFAGRRPCYFNTGVMVIDLVRWRKIGYSKRIERWMEIQKNDRIYELGSLPPFLLVFAGRVAPIEHRWNQHGLGGDNVKGSCRDLHAGPVSLLHWSGSGKPWTRLDSKHPCPLDALWAPYDLYGHAH* >Glyma02g01880.2 sequence type=predicted peptide gene model=Glyma02g01880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLWLMRFSGFFSAAMLVILLSPSLQSFHPAEAIRSSHHLDGLLRLPPPRLSFRPAAPFRNAADGKCASSVPTSVCDPSLVHVAITLDVEYLRGSIAAVHSILQHSQCPENIFFHFLVSETNLESLVKSTFPQLNFKVYYFDPEIVRNLISTSVRQALEQPLNYARNYLADLLEPCVERVIYLDSDLVLVDDIAKLWSTSLGSRTIGAPEYCHANFTKYFTAGFWSDMRFASAFAGRRPCYFNTGVMVIDLVRWRKIGYSKRIERWMEIQKNDRIYELGSLPPFLLVFAGRVAPIEHRWNQHGLGGDNVKGSCRDLHAGPVSLLHWSGSGKPWTRLDSKHPCPLDALWAPYDLYGHAH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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