Report for Sequence Feature Glyma02g01820
Feature Type: gene_model
Chromosome: Gm02
Start: 1307815
stop: 1310409
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g01820
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G47900 AT
Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1624) | chr5:19392556-19394963 FORWARD LENGTH=340
SoyBase E_val: 2.00E-44 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_G7IEH8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Heparan-alpha-glucosaminide N-acetyltransferase n=1 Tax=Medicago truncatula RepID=G7IEH8_MEDTR
SoyBase E_val: 6.00E-81 ISS
UniRef100_I1JBI4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JBI4_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma02g01820
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma02g01820
Paralog Evidence Comments
Glyma10g01890 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma02g01820 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
References for Glyma02g01820
Coding sequences of Glyma02g01820
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g01820.1 sequence type=CDS gene model=Glyma02g01820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TTGATGATATTAGTTGACAACGTGGGAAGGGCATTCCCGTCCTTGAATCATTCTCCATGGTTTGGGGTGACACTAGCCGATTTTATAATGCCGTTTTTTCTCTGTGGTTGGCGTTTCGATCGGTCTGGTATTCAAGGTATGAAATCGTCCAAAGTTGTTCCTGCCTTTTTTATTTTATTTTATTTTATTTTTAAGGATACTGCCCTGTGCTGCAATTGTGTAGATCACTTAAGGAGTGATGTTTTGGACTCTAGACACTATCAGATGTACCAGCGTCCTGTGTACATAAGAAAAAAGGAGTGTAGTGTCAATTCTCCTGACTATGGACCCTTGCCTCCAGATCCACCTGGATGGTGCCTTGCACCATTTGACCCAGATGGTATTTTAAGATATTTCATTTTATTGAGTTTTGCAAAGTGCTTGGTCTATTTCACTGATGGCTGCGATTACTTGTTTCATGGGATTGCAATATGGGCACATAATTGTACATTTGCAGGGCCACAAGCAGAGGGTATTCTTTGGTCGGTGTTTTCCTTCTCTCTATTGCTCGTAGGATACATTCTGGAGATTTTAGGAATGCCTTTATCAAAAGCACTGTACACATTAAGCTACATGTGTATCACTGCAGGGGCATCAGGCTTAGTCGTGACTGCTATCTATTACATTGTTGACATAGAACATCTCAGAAAGCCTACAGTTTTACTGCAATGGATGGGAATGAATGCTCTTGTTGTATATGCATTGGCAGCTTGTGACATTTTCCCAGCAGTTATCCAGGGTTTCTATTGGCACTCTCCTGAAAATAATTTGGTAATGTTTGTTTCCCAATGA
Predicted protein sequences of Glyma02g01820
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g01820.1 sequence type=predicted peptide gene model=Glyma02g01820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
LMILVDNVGRAFPSLNHSPWFGVTLADFIMPFFLCGWRFDRSGIQGMKSSKVVPAFFILFYFIFKDTALCCNCVDHLRSDVLDSRHYQMYQRPVYIRKKECSVNSPDYGPLPPDPPGWCLAPFDPDGILRYFILLSFAKCLVYFTDGCDYLFHGIAIWAHNCTFAGPQAEGILWSVFSFSLLLVGYILEILGMPLSKALYTLSYMCITAGASGLVVTAIYYIVDIEHLRKPTVLLQWMGMNALVVYALAACDIFPAVIQGFYWHSPENNLVMFVSQ*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
