Report for Sequence Feature Glyma02g01780
Feature Type: gene_model
Chromosome: Gm02
Start: 1291579
stop: 1292648
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g01780
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G38700 AT
Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible, LP.12 twelve leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02170.1); Has 64 Blast hits to 64 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0;
SoyBase E_val: 2.00E-43 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_B6SJT6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Long cell-linked locus protein n=1 Tax=Zea mays RepID=B6SJT6_MAIZE
SoyBase E_val: 4.00E-18 ISS
UniRef100_I1JBI1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JBI1_SOYBN
SoyBase E_val: 4.00E-143 ISS
Expression Patterns of Glyma02g01780
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma02g01780
Paralog Evidence Comments
Glyma10g01850 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma02g01780 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.02g014300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g01780
Coding sequences of Glyma02g01780
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g01780.1 sequence type=CDS gene model=Glyma02g01780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTTTGAAGAACCGTGGCGTTGGTCATAGAGCATGGAGCCTCCTGCGGGCGTCATTGTTGTGGGCACGTAAAGGTGGCTTGTTAAGGCGCAGGGTTGCCATGGAGCTGCGTCTGGTACCAAAGTACTTGAAGCGACTCGGCCACACTGCGCCGCCGCCAAGCCACATTCACTACTTTGAGCGCGAGCTCTCGTTCGACAAGACCCCCATATTCCATGTCAAGATGTACCGTCCAACCTCCATGCGCTTCCACTTGCCGCACATTCCTTGCATAAAGCCACATGTTGATTTTGACTATGACTTTAATGATGATGGCAATGTTGAATATGATACTGGAAGAAAGAGTGCCCTCATGGATGCAGGAGACAGCAGAGACCAGGAATTTTGTCATGATTATTATGAAGGATGCCAAGAGATGATGGGTTGTGGTGAGGAAGAGGAAGAGCAACAAGCAGATGCACAGGGGATAGATAAGCAAGCTGAGGAGTTCATTGCTAAATTCTATCAGCAAATGAGGCTGCAGCGCCAGATTTCTCTACTAGAATACAATGAAACACCCAGATCAGACACAAGTTGTTGA
Predicted protein sequences of Glyma02g01780
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g01780.1 sequence type=predicted peptide gene model=Glyma02g01780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGLKNRGVGHRAWSLLRASLLWARKGGLLRRRVAMELRLVPKYLKRLGHTAPPPSHIHYFERELSFDKTPIFHVKMYRPTSMRFHLPHIPCIKPHVDFDYDFNDDGNVEYDTGRKSALMDAGDSRDQEFCHDYYEGCQEMMGCGEEEEEQQADAQGIDKQAEEFIAKFYQQMRLQRQISLLEYNETPRSDTSC*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
