Glyma02g01770 - SoyBase

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Report for Sequence Feature Glyma02g01770

Feature Type:	gene_model
Chromosome:	Gm02
Start:	1283210
stop:	1291134
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g01770

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G02120	AT	Annotation by Michelle Graham. TAIR10: CTP synthase family protein \| chr4:940873-944097 FORWARD LENGTH=556	SoyBase	E_val: 0	ISS
GO:0006221	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyrimidine nucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0009218	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide metabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003883	GO-mf	Annotation by Michelle Graham. GO Molecular Function: CTP synthase activity	SoyBase	N/A	ISS
KOG2387	KOG	CTP synthase (UTP-ammonia lyase)	JGI		ISS
PTHR11550	Panther	CTP SYNTHASE	JGI		ISS
PF00117	PFAM	Glutamine amidotransferase class-I	JGI		ISS
PF06418	PFAM	CTP synthase N-terminus	JGI		ISS
UniRef100_G7IDT8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CTP synthase n=1 Tax=Medicago truncatula RepID=G7IDT8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JBI0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JBI0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g01770

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g01770

Paralog	Evidence	Comments
Glyma10g01840	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g01770 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g014200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g01770

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g01770

Limit To All Plant Sequences

>Glyma02g01770.1   sequence type=CDS   gene model=Glyma02g01770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATACGTGATCATCAGCGGCGGAGTGGTCAGTGGCCTCGGCAAGGGCGTCACCGCCAGCAGCATAGGCGTCGTGCTCAAAGCTTGTGGCCTTCGCGTCACTTCCATCAAAATCGATCCGTACTTGAACATCGACGCTGGCACCATGTCTCCCTTCGAGCACGGTGAGGTTTTCGTTCTCGACGACGGCGGAGAGGTTGATTTGGATTTGGGAAATTACGAGCGCTTCCTCGATGTCACGCTTACCAAAGATAACAACATCACCACTGGAAAAATTTACCAGTCTGTTCTTGAGAAGGAACGTAAAGGCGATTATCTCGGGAAAACTGTTCAGGTGGTCCCGCACATCACTGATGCTATTAAAGATTGGATTGAGTCGGTTGCTGTGATTCCCGTGGATGGAAAGGAGGGCCCTGCAGATGTTTGTGTGATTGAGCTGGGAGGCACTGTGGGTGATATTGAATCTATGCCGTTTATTGAGGCTCTACGGCAATTGTCCTTTCAAGTAGGGCCTGATAACTTCTGTCTCATCCATGTTAGCTTGATACCAGTGTTGGGTGTAGTGGGCGAGCAAAAAACAAAGCCTACACAACATAGTGTCAGGGAGCTGCGAGCATTGGGATTGACACCTCATCTTTTAACAAGTCGCTCTGCTGAGCCTCTTCTAGAAAGCACTAAGGAAAAACTCTCAAAGTTTTGCCATGTTCCAGTTGAGAATATTCTGAACATCCATGATGTACCAAACATTTGGCACATTCCCCTGTTACTGAGAAACCAAAATGCTCACCATTCAATTCTGCATCAGCTTAACTTACTCAGCCAAGCTACACCTCCTGATTTACAGCAGTGGACAGAGATGGCTGAGACCTATGATAATCTTACTGAATCTGTGAGGATTGCAATGGTGGGAAAGTATGTGGGTCTAACAGATTCATATTTATCTGTTGTAAAGGCTCTTCTGCATGCTTGTGTTGCACGCTCTTTCAAGCCATCAATTGACTGGATTGCAGCTTCTGACCTTGAAGATGACAGTGCAGAATCAACACCAGAAGCACATGCTGCGGCCTGGAAGACTTTGAAGAGTGCAGCTTGTGTTTTGGTTCCTGGGGGATTTGGAGATCGTGGTGTGAGAGGTATGATGCTAGCTGCCAAATATGCAAGAGAAAACAATATTCCTTACCTGGGGATTTGCCTGGGAATGCAAATTTCTGTAATTGAGTTTGCTAGATCAGTTTTGGGTTGGGAAAGAGCAAACAGTGTAGAGTTTGATGCCCAAACACCAAATCCTGTTGTGATTTTCATGCCAGAGGGTTCACGGACACATATGGGAAGTACCATGAGGCTTGGATCTCGGAGAACACTCTTACAGACATCTAATTGTATCACTTCCAAGCTGTACGGCAATTCAGAGTATGTGGATGAACGGCATCGGCATAGATACGAGGTAAATCCAGATGTTATTGGAACTTTAGAGGAAGCTGGACTAAAATTTGTTGGGAAGGATGAAAGTGGAAAACGAATGGAGATCTTAGAGCTTCCAAGTCATCCATTCTATGTAGGTGCACAATTCCATCCAGAATTCAAATCACGGCCAGCGAGACCATCTGCTTTGTTTTTAGGTCTCATATTGGCCGCAACAGGAAAGTTGGAAGCGTATATTAGTAGGCAGAATGGAAGTTGA

Predicted protein sequences of Glyma02g01770

Limit To All Plant Sequences

>Glyma02g01770.1   sequence type=predicted peptide   gene model=Glyma02g01770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKYVIISGGVVSGLGKGVTASSIGVVLKACGLRVTSIKIDPYLNIDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDVTLTKDNNITTGKIYQSVLEKERKGDYLGKTVQVVPHITDAIKDWIESVAVIPVDGKEGPADVCVIELGGTVGDIESMPFIEALRQLSFQVGPDNFCLIHVSLIPVLGVVGEQKTKPTQHSVRELRALGLTPHLLTSRSAEPLLESTKEKLSKFCHVPVENILNIHDVPNIWHIPLLLRNQNAHHSILHQLNLLSQATPPDLQQWTEMAETYDNLTESVRIAMVGKYVGLTDSYLSVVKALLHACVARSFKPSIDWIAASDLEDDSAESTPEAHAAAWKTLKSAACVLVPGGFGDRGVRGMMLAAKYARENNIPYLGICLGMQISVIEFARSVLGWERANSVEFDAQTPNPVVIFMPEGSRTHMGSTMRLGSRRTLLQTSNCITSKLYGNSEYVDERHRHRYEVNPDVIGTLEEAGLKFVGKDESGKRMEILELPSHPFYVGAQFHPEFKSRPARPSALFLGLILAATGKLEAYISRQNGS*

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