Glyma02g01740 - SoyBase

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Report for Sequence Feature Glyma02g01740

Feature Type:	gene_model
Chromosome:	Gm02
Start:	1261028
stop:	1265610
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g01740

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G47460	AT	Annotation by Michelle Graham. TAIR10: myb domain protein 12 \| chr2:19476438-19479242 FORWARD LENGTH=371	SoyBase	E_val: 4.00E-75	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009723	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009813	GO-bp	Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0010224	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to UV-B	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR10641	Panther	MYB-RELATED	JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_D5FFI0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MYB transcription factor MYB112 n=1 Tax=Medicago truncatula RepID=D5FFI0_MEDTR	SoyBase	E_val: 4.00E-100	ISS
UniRef100_UPI0002336BE2	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002336BE2 related cluster n=1 Tax=unknown RepID=UPI0002336BE2	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g01740

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g01740

Paralog	Evidence	Comments
Glyma10g01801	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g01740 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g013900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g01740

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g01740

Limit To All Plant Sequences

>Glyma02g01740.1   sequence type=CDS   gene model=Glyma02g01740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGGGCTCCTTGTTGTGAGAAAGTGGGATTGAAGAAGGGGAGGTGGACAGCAGAGGAGGATGAGATCTTGGCAAAATACATTCAGGCCAATGGGGAAGGTTCTTGGAGGTCATTGCCTAAAAATGCAGGATTATTAAGGTGTGGGAAGAGTTGCAGGCTGAGATGGATTAACTATTTGAGAGCTGACCTTAAAAGAGGAAACATTTCTGCTGAAGAGGAAAATACCATTGTTAAGTTGCACGCTTCTTTTGGTAACAGGTGGTCTTTGATAGCAAATCACTTACCAGGAAGAACAGACAACGAGATAAAAAACTACTGGAATTCTCACCTCAGCAGGAAAATTTACAGTTTCCCAGGTGCAGGTGCAGGTGCAAGTGCAGGGATCATGGATACACCTAAGGTAGTATATATTCCTCCCAAGCGCAAATGTGGTAGAACAAGTCGTTGGGCCATGAAGAAAAACAAAACATACACCCAAAAAGTCAATGATAGGATTAACCAGAGACACACACAAATTGGTTTCCCTCAACAGAACAGTGACACCGCAGTTCCGACGCCACCAACTCCGTCTCTAGAGAGTGAGGGTTTGTCAAACGCCGTTAATGACTTCAAGGTCCTGGACGGTGACGTGGCAGAGTTTGATGAGCCGAGAACGGAGGAGCTGGAGGCGGAGGTAAATAAACGTGACAATAGCGTTGGAGGCGTGGAAGAAAGTAGTAATACCGATGAAGACATCTTGGGACTGTGTGAACTAGAGGGCATTAATGAGGACAGTGGGATGTTGTTGGGTTTTAGTGACATTTTGGAAAGTTGCCTTGCGGAAACAACATGTGGGGTTTGGGACATAAGTGAAGAGAGAGAAAGCAATGACGTGGTGGCGGCTGATGCTTGTCGCGACAAAATAGCATCGAGTGAGGAAGGGTCATGCTCTTCCATGAATCAAGACTGGGACTGGGAGAGCGTGTTAGAGTTTAGTAACGCTGTTGATAATTGGGAGGACCAAGACAAATTGCTCACTTGGCTGTGGGAGGACGATGACTGCAAGAGATTGGGAGAGACAGATACTCAGATACTACAAAACGACATGGTTATTGATTGGTTTCTCTCTTGA

Predicted protein sequences of Glyma02g01740

Limit To All Plant Sequences

>Glyma02g01740.1   sequence type=predicted peptide   gene model=Glyma02g01740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRAPCCEKVGLKKGRWTAEEDEILAKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNISAEEENTIVKLHASFGNRWSLIANHLPGRTDNEIKNYWNSHLSRKIYSFPGAGAGASAGIMDTPKVVYIPPKRKCGRTSRWAMKKNKTYTQKVNDRINQRHTQIGFPQQNSDTAVPTPPTPSLESEGLSNAVNDFKVLDGDVAEFDEPRTEELEAEVNKRDNSVGGVEESSNTDEDILGLCELEGINEDSGMLLGFSDILESCLAETTCGVWDISEERESNDVVAADACRDKIASSEEGSCSSMNQDWDWESVLEFSNAVDNWEDQDKLLTWLWEDDDCKRLGETDTQILQNDMVIDWFLS*

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