Glyma02g01720 - SoyBase

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Report for Sequence Feature Glyma02g01720

Feature Type:	gene_model
Chromosome:	Gm02
Start:	1240561
stop:	1244341
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g01720

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G02660	AT	Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein \| chr1:572187-574746 REVERSE LENGTH=713	SoyBase	E_val: 0	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0004806	GO-mf	Annotation by Michelle Graham. GO Molecular Function: triglyceride lipase activity	SoyBase	N/A	ISS
PF01764	PFAM	Lipase (class 3)	JGI		ISS
UniRef100_G7IDS8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lipase n=1 Tax=Medicago truncatula RepID=G7IDS8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JBH3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JBH3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g01720

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g01720

Paralog	Evidence	Comments
Glyma10g01770	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g01720 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g013700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g01720

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g01720

Limit To All Plant Sequences

>Glyma02g01720.1   sequence type=CDS   gene model=Glyma02g01720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAACTATGTGTTTAAAATCTGGGATAGTTCCCACGATCTCTATTAGTGGGTCGCTGGACGCACGTGCCAATCCTTCCCAGGTGAGCACGGTGGGGCGCTCCGCATCGGATAAACCGCCGCAGAGGTCGGTGTTTTCGAGATTTTCCTTTTGGTACCCTTTGGAATCTCTCTGGCCTCGGGGGAACAACAGCAGGTACAAGGGGTTGGCCCTCGACGACGCCGTTTTGTCGGACAACAACGCCGAAGCGAAGGCCGTTGGAGATGACGGAACGGAACGGCAGACCGGAAACTGGGTTTTGAAGATTCTGCATGTGAAGTCCCTGTGGGAGGGGAAACAGCGCGATGAAGAGGAGGGATCGGTTCGTGATCAAACTCAAACCAATTACGAGGAGGAGGAGGAGGTGTGTGAATGTGATGCTTGCGATGAAGTAGAGGAGGCTCAATTCGATAGAGGCTCGTTTTCGAGAATGCTTCGGAGGGTATCGTTAGCCGAATCTAGATTGTACGCTCAGATGTCACACTTGGGGAACTTGGCTTACGATATACCTAGAATCAAACCAGGGAAGCTCTTGAAACATTATGGTCTGCGCTTTGTAACTTCATCAATAGAGAAGAAGGAATTGGCAGTGGCAGCAACAGCTGAAAAGGATCCCCAGAAAGTTCAAACTGATGAGAAGGTAGACGAAAAAGAAGAGAGAAAGGATCCTAAGAACGGTGAATACAAGATAAGTGCAACTGCTGCTTATAATATTGCCGCCTCTGCTGCCACTTATCTGCATTCTCAGACTAGAAGCATATTTCCATTGAAATCCTCAAATGCTGTGGCTGGTGAAGGTTCACTTGCAGGGAACAATGAAAGCCTTGACAGTGTTAACATGCTAAACACAGAGGTGGCATCTTTGATGGCAACTACTGATTCGGTGACAGCAGTGGTTGCAGCAAAGGAGGAAGTAAAGCAAGCTGTTGCAGATGATCTGAACTCTTCACATTCAACACCCTGTGAATGGTTTGTCTGTGATAATGACCAGAGTGGTACAAGATTTTTTGTTATTCAGGGTTCTGAGACATTGGCTTCCTGGCAAGCAAACCTACTTTTTGAGCCGATTAAATTTGAGGGTTTAGATGTACTTGTGCACAGAGGTATATACGAGGCTGCTAAAGGGATATATCAACAGATGTTGCCAGAGGTACATGCTCACCTAAAATCTCGAGGCTCTCGTGCTACTTTTCGGTTCACTGGGCATTCCCTTGGTGGAAGCTTGGCATTACTTGTGAATCTCATGCTGTTGATAAGGCATGAAGTGCCGATCTCCTCTCTACTTCCTGTGATAACATTTGGTTCCCCATCCATCATGTGTGGAGGTGATAGTCTGCTAGAAAAGTTAGGTTTGCCTAAGAGCCATGTTCAAGCAATTACAATGCACAGAGACATAGTACCACGAGCATTTTCTTGCAATTACCCTAATCATGTTGCAGAACTATTGAAAGCTGTCAATGGGAACTTCCGTAGTCATCCTTGTCTCAATAAACAGAAGCTACTATATGCACCAATGGGTAATCTGCTGATTCTGCAGCCTGATGAGAAGTTTTCACCAAGCCATCATCTCCTGCCATCAGGCAGTGGTCTATATCTTTTGTGTTGTCCTTTATCAGAATCCAATGACACAGAGAAGCAGCTCCGAGCTGCTCAGATGGTCTTCTTGAACTCACCTCATCCACTTGAGATATTAAGTGACCGATCTGCTTATGGATCTGGAGGAAGTGTACAAAGAGATCATGACATGAATTCCTACTTAAAATCTGTGAGAACTGTGATCCGCCAAGAACTTAACCAGATCCGTAAAGCCAAGAGAGAGCAACGGCGCAAGGTGTGGTGGCCTCTTTTATTACCTCGTGGAGTTGATACCAGCATTGTTGCTGGGAGGTCCATGATATCAATCAATGTGGGTCAACGCCAGTCACCCTTCTCCGGCGTGATACAAACAGGGAGAGAATCCCTGAAAAGGTTCAGTAGGGTTGTTACATCCCAACATATGCATTTGTTTGTGTTGCTTTTGTTCCCTGCTCGGTTGTTACTCTTGGGAACATATAGCGTAATTAACCTCAAATGA

Predicted protein sequences of Glyma02g01720

Limit To All Plant Sequences

>Glyma02g01720.1   sequence type=predicted peptide   gene model=Glyma02g01720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METMCLKSGIVPTISISGSLDARANPSQVSTVGRSASDKPPQRSVFSRFSFWYPLESLWPRGNNSRYKGLALDDAVLSDNNAEAKAVGDDGTERQTGNWVLKILHVKSLWEGKQRDEEEGSVRDQTQTNYEEEEEVCECDACDEVEEAQFDRGSFSRMLRRVSLAESRLYAQMSHLGNLAYDIPRIKPGKLLKHYGLRFVTSSIEKKELAVAATAEKDPQKVQTDEKVDEKEERKDPKNGEYKISATAAYNIAASAATYLHSQTRSIFPLKSSNAVAGEGSLAGNNESLDSVNMLNTEVASLMATTDSVTAVVAAKEEVKQAVADDLNSSHSTPCEWFVCDNDQSGTRFFVIQGSETLASWQANLLFEPIKFEGLDVLVHRGIYEAAKGIYQQMLPEVHAHLKSRGSRATFRFTGHSLGGSLALLVNLMLLIRHEVPISSLLPVITFGSPSIMCGGDSLLEKLGLPKSHVQAITMHRDIVPRAFSCNYPNHVAELLKAVNGNFRSHPCLNKQKLLYAPMGNLLILQPDEKFSPSHHLLPSGSGLYLLCCPLSESNDTEKQLRAAQMVFLNSPHPLEILSDRSAYGSGGSVQRDHDMNSYLKSVRTVIRQELNQIRKAKREQRRKVWWPLLLPRGVDTSIVAGRSMISINVGQRQSPFSGVIQTGRESLKRFSRVVTSQHMHLFVLLLFPARLLLLGTYSVINLK*

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