Report for Sequence Feature Glyma02g01660
Feature Type: gene_model
Chromosome: Gm02
Start: 1196208
stop: 1200943
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g01660
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G02640 AT
Annotation by Michelle Graham. TAIR10: beta-xylosidase 2 | chr1:564293-567580 FORWARD LENGTH=768
SoyBase E_val: 0 ISS
GO:0005975 GO-bp
Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process
SoyBase N/A ISS
GO:0046685 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to arsenic-containing substance
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0009505 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall
SoyBase N/A ISS
GO:0004553 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds
SoyBase N/A ISS
PF00933 PFAM
Glycosyl hydrolase family 3 N terminal domain
JGI ISS
PF01915 PFAM
Glycosyl hydrolase family 3 C terminal domain
JGI ISS
UniRef100_G7IDS0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Beta xylosidase n=1 Tax=Medicago truncatula RepID=G7IDS0_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI0002337A7D UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002337A7D related cluster n=1 Tax=unknown RepID=UPI0002337A7D
SoyBase E_val: 0 ISS
Expression Patterns of Glyma02g01660
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma02g01660
Paralog Evidence Comments
Glyma10g01710 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma02g01660 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.02g013300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g01660
Coding sequences of Glyma02g01660
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g01660.1 sequence type=CDS gene model=Glyma02g01660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTTCCATCTTTTCACCCTTAACCACTATCTTCCTCCTACTCCTACTCGTACTTTGGGGTGGCGAGGCACGTGACCCTTTTGCTTGTGACCCTAAGAACACCGCCACAAAAAACTTACCATTTTGCAAGGCTTCGTTGGCAACAGGGGCAAGGGTGAAGGACCTCATTGGAAGGTTGACACTGCAAGAAAAAGTTAACTTGCTAGTGAACAATGCCGCGGCAGTGCCACGGCTTGGTATCAAAGGGTATGAGTGGTGGTCGGAGGCACTACATGGGGTCTCAAATGTGGGCCCCGGAACCAAGTTCGGTGGCCAGTTCCCTGCCGCCACTAGCTTCCCTCAAGTCATCACCACCGCTGCTTCTTTCAATGCTTCTCTGTGGGAAGCAATCGGGCGGGTTGCCTCGGACGAAGCAAGAGCAATGTACAATGGTGGAACGGCTGGGCTGACATACTGGAGCCCAAACGTGAACATCTTTAGGGACCCACGGTGGGGCCGCGGACAGGAGACTCCCGGTGAGGACCCAATACTAGCCGGTAAATATGCAGCCAGTTACGTGAGGGGGCTTCAGGGAACTGACGGTAACCGGTTAAAGGTCGCTGCCTCTTGCAAACACTTTACGGCTTATGACCTTGATAATTGGAACGGTGTGGATCGCTTTCACTTTAATGCACAGGTTAGCAAGCAGGACATTGAGGACACGTTCAATGTGCCATTCAGAATGTGCGTGAAGGAAGGCAAAGTGGCGAGTGTGATGTGTTCTTACAATCAGGTTAACGGGGTTCCCACCTGTGCGGACCCCATCCTCCTAAAGAGAACAGTTCGTGGCCAATGGGGTCTTAATGGGTACATTGTATCAGACTGTGACTCTGTTGGGGTGTTTTACAATAGCCAACATTACACATCTACCCCAGAAGAAGCTGCTGCCGATGCCATTAAAGCTGGTTTGGATTTGGATTGTGGGCCTTTTCTGGGACAACATACGCAGAATGCTGTGAAGAAAGGCCTCATAAGCGAAGCTGATGTGAATGGGGCTTTATTGAACACATTAACAGTCCAAATGAGGTTAGGGATGTATGATGGTGAGCCATCAAGTCATCCATATAACAACCTTGGTCCAAGAGATGTGTGCACCCAAAGTCACCAAGAGCTTGCCCTTGAAGCCGCAAGACAAGGGATTGTGCTTCTTAAAAACAAAGGTCCTTCTTTGCCTCTCTCCACTAGGCGTGGCCGCACTGTAGCTGTTATTGGGCCCAATTCTAATGTCACTTTCACAATGATTGGCAACTATGCTGGTATTGCTTGTGGATACACTAGTCCCTTACAAGGAATAGGGACATACACCAAGACAATTTATGAGCATGGTTGTGCAAATGTGGCTTGTACTGATGACAAGCAATTCGGGAGAGCCATAAATGCAGCCCAACAAGCAGATGCAACTGTGCTAGTGATGGGCCTAGATCAGTCCATTGAGGCTGAAACTGTGGACAGGGCTAGCCTGCTTCTTCCTGGACATCAGCAAGACCTTGTGTCCAAAGTAGCAGCTGCCTCCAAGGGCCCAACAATTTTGGTCATTATGTCTGGTGGGCCTGTGGATATAACATTTGCGAAGAATGATCCTCGAATCCAAGGAATCTTGTGGGCCGGTTATCCCGGTCAAGCTGGTGGTGCCGCTATAGCAGATATCTTGTTTGGAACATCTAACCCCGGAGGCAAGTTGCCTATGACATGGTACCCACAAGGGTACATTAAAAACTTGCCAATGACAAATATGGCAATGAGAGCAAGCCGAAGCAAAGGGTACCCTGGAAGAACCTACCGATTTTACAATGGCCCAGTGGTGTATCCATTTGGTTACGGATTGTCTTACACGCACTTTGTTCATACATTAACTAGTGCACCCAAATTGGTCTCAATTCCCGTGGATGGGCACCGCCACGGCAACAGCTCCAACATCGCGAACAAGGCAATTAAAGTGACACATGCACGATGTGGCAAGCTTTCCATTAACCTTCACGTGGACGTTAAAAATGTTGGCTCCAAAGATGGCATTCACACGTTGTTGGTGTTCTCAGCCCCACCTGCGGGTAATGGCCATTGGGCTCCACACAAGCAATTAGTGGCTTTTGAGAAAGTCCATATTCCCGCCAAGGCCCAACAACGGGTGAGAGTCAAAATTCATGTTTGTAAGCTCTTGAGCGTGGTTGACCGGTCTGGGACTAGGAGAATTCCAATGGGTTTGCACAGTCTTCACATTGGTGATGTTAAACACTCCGTGTCACTTCAGGCAGAAACACTTGGAATTATCAAGTCCTAA
Predicted protein sequences of Glyma02g01660
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g01660.1 sequence type=predicted peptide gene model=Glyma02g01660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGSIFSPLTTIFLLLLLVLWGGEARDPFACDPKNTATKNLPFCKASLATGARVKDLIGRLTLQEKVNLLVNNAAAVPRLGIKGYEWWSEALHGVSNVGPGTKFGGQFPAATSFPQVITTAASFNASLWEAIGRVASDEARAMYNGGTAGLTYWSPNVNIFRDPRWGRGQETPGEDPILAGKYAASYVRGLQGTDGNRLKVAASCKHFTAYDLDNWNGVDRFHFNAQVSKQDIEDTFNVPFRMCVKEGKVASVMCSYNQVNGVPTCADPILLKRTVRGQWGLNGYIVSDCDSVGVFYNSQHYTSTPEEAAADAIKAGLDLDCGPFLGQHTQNAVKKGLISEADVNGALLNTLTVQMRLGMYDGEPSSHPYNNLGPRDVCTQSHQELALEAARQGIVLLKNKGPSLPLSTRRGRTVAVIGPNSNVTFTMIGNYAGIACGYTSPLQGIGTYTKTIYEHGCANVACTDDKQFGRAINAAQQADATVLVMGLDQSIEAETVDRASLLLPGHQQDLVSKVAAASKGPTILVIMSGGPVDITFAKNDPRIQGILWAGYPGQAGGAAIADILFGTSNPGGKLPMTWYPQGYIKNLPMTNMAMRASRSKGYPGRTYRFYNGPVVYPFGYGLSYTHFVHTLTSAPKLVSIPVDGHRHGNSSNIANKAIKVTHARCGKLSINLHVDVKNVGSKDGIHTLLVFSAPPAGNGHWAPHKQLVAFEKVHIPAKAQQRVRVKIHVCKLLSVVDRSGTRRIPMGLHSLHIGDVKHSVSLQAETLGIIKS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
