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Report for Sequence Feature Glyma02g01650

Feature Type:gene_model
Chromosome:Gm02
Start:1187188
stop:1188265
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g01650
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G02090AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; Has 132 Blast hits to 132 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:923122-923730 FORWARD LENGTH=202 SoyBaseE_val: 9.00E-29ISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_G7IDR9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Multidrug resistance protein ABC transporter family protein n=1 Tax=Medicago truncatula RepID=G7IDR9_MEDTR SoyBaseE_val: 8.00E-78ISS
UniRef100_I1JBG8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JBG8_SOYBN SoyBaseE_val: 1.00E-118ISS

Expression Patterns of Glyma02g01650
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g01650
ParalogEvidenceComments
Glyma10g01700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g01650 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g013200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g01650
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g01650
>Glyma02g01650.1   sequence type=CDS   gene model=Glyma02g01650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAACCAAGTCTCAGAAGTGAGGGGCAAAATAGTAATGTGGGATGGTTCGGTGCAGGAAATAGAGCAACCTTTGACAGTGGCAGAGTTGATGCTGGAGCACCCAGAGCAAGTTGTGGTTGAGTTGCATTCAGCAGTGAAGCAGAAAAGGGCAACACCATTGCCAGCAGATAACAAGTTAGAGACAAACAAGGTGTATCTGATGCTTCCCATTAAGCGAGGGAAGCCCGTTGGATTAAGCGGGGAAGACACTCGGCGCATTCTCTTGATCCTTAATTCTGCTCTGCACCACTCCAAGTTTGTTCCCTGGCTCACGCGTCTGTGCCAGAACACTACTACAATTGTCGAACCTCAGAGAAAGGAAATAACAAAACAAGAACAAGAGAGCTGCCAGTTGTTTTTCCCGGAAATCTTGGAAGGGAGGCCTGAATATTTGAATAGGCAGGTTTCAGGGAAAGGGTGGAAGCCTACTCTGGACACCATTAAGGAGAATAATATTGACAGAAAACTCACTCACTGGTTGTTCCTCAAGACCTTTTAG
Predicted protein sequences of Glyma02g01650
>Glyma02g01650.1   sequence type=predicted peptide   gene model=Glyma02g01650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNQVSEVRGKIVMWDGSVQEIEQPLTVAELMLEHPEQVVVELHSAVKQKRATPLPADNKLETNKVYLMLPIKRGKPVGLSGEDTRRILLILNSALHHSKFVPWLTRLCQNTTTIVEPQRKEITKQEQESCQLFFPEILEGRPEYLNRQVSGKGWKPTLDTIKENNIDRKLTHWLFLKTF*






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