Glyma02g01620 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma02g01620

Feature Type:	gene_model
Chromosome:	Gm02
Start:	1148263
stop:	1162983
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g01620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G47410	AT	Annotation by Michelle Graham. TAIR10: WD40/YVTN repeat-like-containing domain;Bromodomain \| chr2:19449133-19456991 FORWARD LENGTH=1520	SoyBase	E_val: 0	ISS
GO:0009630	GO-bp	Annotation by Michelle Graham. GO Biological Process: gravitropism	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0080008	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
KOG0316	KOG	Conserved WD40 repeat-containing protein	JGI		ISS
PTHR16266	Panther	WD REPEAT DOMAIN 9	JGI		ISS
PTHR16266:SF18	Panther		JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_G7IDR0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WD-40 repeat protein-like protein n=1 Tax=Medicago truncatula RepID=G7IDR0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002337A79	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337A79 related cluster n=1 Tax=unknown RepID=UPI0002337A79	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g01620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g01620

Paralog	Evidence	Comments
Glyma10g01671	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g01620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g012900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g01620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g01620

Limit To All Plant Sequences

>Glyma02g01620.1   sequence type=CDS   gene model=Glyma02g01620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCGAGGAAGGGCAAAGCTTCTGTTTCTGCATCTTCACTGAGTGCTGCACCTTTGAGTGTTTCAAATAAGGTGGATCAGATGGTGTCGCCCCCTAGGGATGTGAGAGCTGTTGAGACTGATGTGGATATAGACCTTAGGGAAATTTACTTTTTAATCATGCACTTTTTGTCTGTCGGGCCATGCCATAGGACTTTTCTAAATTTCAAGGAGGAACTTTTAGAGCATCAGCTTCTACCTAGAAGATATCATGCTTGGTTTTCAAGAAGTGGTGAACCCAGTGGGGATGATGCGGATGAAGATGATGATGGCATCTCTTTACCTTTAGATTACAGCAATCTAGTGGGCAGGTATCCTCACATAACTAAGGATCATTTGGTGAAGCTTCTGAAGCAATTGATGCTGAGTACGGTCAATCCTTTGCATGGAAAACTTGAAGGAAGTAGTCCTAATGCAGCTGATGTTCCTACTTTACTTGGATATGGTTCATTTTCGCTTCTTAATGTTGATAGAAAAACAGCTGACAAACTGGTGAAGCCCCCTCCACTTTACATGCGTTGGCCACATATGAAGGCTAATCAGGTTCAGGGGCTAAGTTTAAGGGAGATTGGAGGTGGTTTTACTAAGCACCATCGTTCTCCATCCATTCGCAGTGCATGTTATGCAATCGCCAAACCATCTACTATGGTGCAAAAGATGCAAAATATTAAAAAGCTAAGGGGGCACCGTGTGGCTGTCTATTGTGCCATATTTGATGGATCCGGGAGATATGTTATTAGTGGTTCAGATGATCGTCTTGTCAAGATTTGGTCTATGGAAACTGCATTTTGCTTAGCTAGTTGCCGTGGACATGAAGGTGATATTACTGATTTGGCTGTAAGCTCAAACAATGCTTTGGTGGCATCTGCTTCAAATGATTTTGTCATTCGAGTTTGGCGCTTACCAGATGGGATGCCGATATCAGTTTTGCGGGGACATACTGGAGCAGTTAATACTATTACATTTAGTCCCAGTGTCATATACCAGCTACTATCGTCATCAGATGATGGAACTTGTAGAATATGGGATGCGAGAAATTCACACAATCCACGAATATATGTACCTCGACCTCCAGATGCTATAAATGGGAAGGGCAATGCTCCACCAGCTAGTTTGCCATCCTCAAGTAATGTTCAACAAAGCTATCAAGTACTTTGTTGTGCATATAATGCAAATGGAACTGTTTTTGTTACTGGTAGCTCTGATACTTATGCCAGGGTGTGGAGTGCTTTGAAGCCCAACACTGATGACGCAGAACAACCAATACACGAGATGGATTTATTATCTGGCCACGAGAATGATGTTAATTATGTGCAGTTTAGCGGTTGCTCTGTGGCTTCAAAAATTTTGACATCTGACCCCTGGAAAGAAGAAAATACTTTGAAGTTCCGAAATTTCTGGTATTGTCATGATAACATAGTTACCTGCTCTCGTGATGGTAGTGCAATTATATGGGTTCCCAGATCACGTAAATCTCATGGAAAAGTAGGACGCTGGACTCGTGCATATCATTTAAAAGTGCCACCACCGCCTCTGCCTCCCCAACCTCCACGAGGTGGTCCAAGGCAGAGATTTCTACCTACACCTCGTGGTGTCAATATGATTATATGGAGCCTGGACAATCGCTTTGTGCTTGCAGCTATTATGGATTGCAGAATATGTGTTTGGAATGCAGTTGATGGCAGCTTAGTGCACTCTTTGACTGGTCATACTGAATCTTCTTATGTTTTGGATGTTCACCCTTTCAACCCTCGAATAGCTATGAGTGCTGGGTATGACGGACGAACCATTGTGTGGGATATATGGGAGGGCATACCTATTCGGACATATGAAATTGGACGTTTTAAGTTGGTTGATGGGAAGTTTTCTCCGGACGGAACATCAATTGTGCTTTCAGATGATGTTGGCCAAATATATTTTCTGAACACAGGTCAAGGCGAGTCCCAGAAAGATGCAAAATATGATCAGTTTTTTCTTGGTGATTATCGACCCCTTATTCAGGATACTCAGGGATATGTTCTTGATCAGGAGACTCAACTTCCACCACACCGAAGAAACATTCAGGAACCTCTATGTGATTCTAGTATGCTGCCATATCCAGAACCTTATCAGAGTCAATTTCAGCAACGTCGACTTGGTGCTCTTGGCATTGAATGGCGTCCTTCATTGATAAAATATGCTGTTGGTCCAGATTTTACTGTTGGTCAGGACTACCCAGTGGTACCTTTGGTAGATTTGGAAGTAATGGTTGAGCCACAACCAGAGTTCTTAGATGCCATGTTCTGGGAGCCAGAATATGACATTATTGTAAGCGATGATGCTGACTCTGAATACAATGCAAATGAGGATAGTTCTAGTGCAGCCGGGCAAGGGAGTGTTATCTCTTCTAGTGATCTAGAATATAGTGATGACTCTAGTAATAGGGACGGCCTTCGAAGATCAAGAAGGAAAAAACATAATGTTGGAGTTGAGGTAATGACTTCCTCTGGAAGGCGTGTAAGGAAAAGGAATTTGGATGAGTGTAATGGTAATACTTCTGGAAGTAACAGACTCCGCAAGAAATCCAAGGGCAGCTCAAAAGCCTCAAAAAGGAAATCTTCCATAGCTAAGACATTGAGACCCCAGCGAATTGCTGCACATAATGCTCGTAGTATGTTCTCTCAAATTGATGAAACATCTACTGATGGGGAAGATAATGATTCTGATGAAGAAGCATCAGACAGTTTCCAAGATCCTGATGATCTTAGTGAATCTGAGAGGGAAATGGATAATAAACATCTTGAAATTAAAAAGCCCCTTTTAGAAAAGTTTGCAACTGTGTCCAAGCCTCCTGCATTCTCTGAGTCCCTGGTAAATGTTGAAACTAGACCGAGACTGGTTGTTAAGTTTTCACTTCGTGATTCTAAGAAGAATGTGCCCACTGAGGACACAAGACTAGCTTGTGAGACTCAGGATAATATGGTATCCCAGTCTTCTAGACCTCAACCTGAAGAAAGTGATCAAAAAACTTTTCCAGACACAAAATCGTTGGACCCTGCATTATCTTCTATGGTTGCAACTAATGCTGAACTTCCCCAAAGCCTCAACGGAAATGAAAATGATGATAAAGAACAAACTGAAAATGCTACAAATAATCTGTATGCATTCAGATATGTTGAGGCAAACACAGATCAGTGCAGAAAGATGAAGACACACACACATGAACTTTCAAGATCAGGGGATGCTTTGCTGACTGATGCTGAAATTGATGACCTTCTTGAACACAATGCTAATGGGAGATCAGAACATGTGATTGGCAAGTTAGAGACTGTCGGGAGTATGGTTAATACAGAGCTGACTGATTTTGAAGATGCACCTAAATTTTCATCGCTTGAACCTTCATTGTTTGGCAATCCTCAGCCAAATGCTGATGGCTCCTTGACATCTGGTTATGATAAGTTCAATGAAGGTGATAAAGGCCAGTCTGGATCTGACAAATGTGCAGAGGACACACTAGAAAACAATGAAGTTGTTCACTCAAGCCATTGCCATGACCTCAAAATGAAAGCACCTGTGAAATCAACCAAGTTAGTTATTAAAAAGAAACAAATTTCAGCAGACACTGAAGGTCCTTGCAAACTGAAAATTGTTAGTTCTAAGGCAGATTCAAGCTGTGCTAGAGGTATTGGGATATCTGAAAATTCCTCCTCTATGGGGCCTAATCTAGTCACAGAAGTACCAGAAGGTGAAGATGACAGAAAATTTAGTTCTCCACAGCTACTGCATTCATATTCTGACAAGAGAAGTTATGATCACTTCCATAAAAGGGACAAGTCATATAAAGGGAAAGTCAATCAAGATGGTTTTGAATCTTTTGATTGTGATATGGGAGAACATACTTCTGTTTTCAGCAACCAACATGGTTTAGGAATTGGTTTGTCTGATGTTACAAGTGATCCTATGCGTCAAACACGGTTTATAAGGATGAAGACAACTTCTGAGGAGCCAAGCACTTCAAACAGAAGAATTAAAATTCGACAGGGTCAAAGTTCCAGGGGAAAATCTGATCGGGAAGACTCTTCTACCAGAATGTCAGATCAACTTCATCGAAGAATAAGGACAGCCAGACACAGGAATGGTGAATATATTGCCAATGATTCTGGTACTTTAACTCGAAGGGTGTCAAATCACCATGTCAAAAAATTGTCATGGCTGATGTTGTCAGAGCCTGAAGAGGGTTACCGATATATTCCTCAACTTGGTGATGAAGTTGTGTACTTAAGACAGGGCCATCAAGAGTACATAAAGTCATATTCATTATCTGAATCAGGTCCATGGAGATCATTTACAGGGCTAGGTGCTTCTGAAATTTGCAAGGTTGAAGAACTTGAGTATGCAGAGCTACCAGGCTCTGGGGATAGCTGTTGTAAACTTAAACTTAGATTTCTAGATCCTTCTTCGTGTGTGCATGGCAAATCGTTTAAATTAACTCTACCTGAATTGATTAACTTCACTGATTTTGTTATTGAGAAAACATGGTATGATACTGCCATGAAGAGAAATTGGTCTTCAAGAGATAAATGCATGGTCTGGTGGAGAAATGAAGATGGGAAAGGTGGAAGTTGGTGGGATGGTCGAATTATTCAAGTGCAGGCCAAATCTGATGACTTCCCAGAGAGTCCTTGGGAAAGGTATCGGGTCCAGTACAAGACTGATCCCACCGAGAATCATCTGCATAGTCCGTGGGAACTATATGATTCTGAGATGCTATGGGAGCATCCCCACATTGATCATGAGATCAGAGATAAGCTGCTTTCCTATTTCACCAAATTAGACCGCAGGGAGAGGTTTGATATCCAAGCACTGAACCAAGTAGCTGAGAAATTAGAGTTTGCAAACAGGTTTCCTGCCCCATTCTATCCTGAACTAATTCAATCAAGGTTGAAGAATGACTACTATCGGAGTGTGGAAGGTGTCAACCATGATATAATGATAATGTTATCAAATGCGGAAGAATATTTTAAAATTACAAAGAATGTTCAGCTGGTGGGCAAGATCAGGAGAATATCAGAATGGTTTAGAAGGAAACTTGAAAGGATATAG

Predicted protein sequences of Glyma02g01620

Limit To All Plant Sequences

>Glyma02g01620.1   sequence type=predicted peptide   gene model=Glyma02g01620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSRKGKASVSASSLSAAPLSVSNKVDQMVSPPRDVRAVETDVDIDLREIYFLIMHFLSVGPCHRTFLNFKEELLEHQLLPRRYHAWFSRSGEPSGDDADEDDDGISLPLDYSNLVGRYPHITKDHLVKLLKQLMLSTVNPLHGKLEGSSPNAADVPTLLGYGSFSLLNVDRKTADKLVKPPPLYMRWPHMKANQVQGLSLREIGGGFTKHHRSPSIRSACYAIAKPSTMVQKMQNIKKLRGHRVAVYCAIFDGSGRYVISGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNALVASASNDFVIRVWRLPDGMPISVLRGHTGAVNTITFSPSVIYQLLSSSDDGTCRIWDARNSHNPRIYVPRPPDAINGKGNAPPASLPSSSNVQQSYQVLCCAYNANGTVFVTGSSDTYARVWSALKPNTDDAEQPIHEMDLLSGHENDVNYVQFSGCSVASKILTSDPWKEENTLKFRNFWYCHDNIVTCSRDGSAIIWVPRSRKSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRFLPTPRGVNMIIWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHTESSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGIPIRTYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYFLNTGQGESQKDAKYDQFFLGDYRPLIQDTQGYVLDQETQLPPHRRNIQEPLCDSSMLPYPEPYQSQFQQRRLGALGIEWRPSLIKYAVGPDFTVGQDYPVVPLVDLEVMVEPQPEFLDAMFWEPEYDIIVSDDADSEYNANEDSSSAAGQGSVISSSDLEYSDDSSNRDGLRRSRRKKHNVGVEVMTSSGRRVRKRNLDECNGNTSGSNRLRKKSKGSSKASKRKSSIAKTLRPQRIAAHNARSMFSQIDETSTDGEDNDSDEEASDSFQDPDDLSESEREMDNKHLEIKKPLLEKFATVSKPPAFSESLVNVETRPRLVVKFSLRDSKKNVPTEDTRLACETQDNMVSQSSRPQPEESDQKTFPDTKSLDPALSSMVATNAELPQSLNGNENDDKEQTENATNNLYAFRYVEANTDQCRKMKTHTHELSRSGDALLTDAEIDDLLEHNANGRSEHVIGKLETVGSMVNTELTDFEDAPKFSSLEPSLFGNPQPNADGSLTSGYDKFNEGDKGQSGSDKCAEDTLENNEVVHSSHCHDLKMKAPVKSTKLVIKKKQISADTEGPCKLKIVSSKADSSCARGIGISENSSSMGPNLVTEVPEGEDDRKFSSPQLLHSYSDKRSYDHFHKRDKSYKGKVNQDGFESFDCDMGEHTSVFSNQHGLGIGLSDVTSDPMRQTRFIRMKTTSEEPSTSNRRIKIRQGQSSRGKSDREDSSTRMSDQLHRRIRTARHRNGEYIANDSGTLTRRVSNHHVKKLSWLMLSEPEEGYRYIPQLGDEVVYLRQGHQEYIKSYSLSESGPWRSFTGLGASEICKVEELEYAELPGSGDSCCKLKLRFLDPSSCVHGKSFKLTLPELINFTDFVIEKTWYDTAMKRNWSSRDKCMVWWRNEDGKGGSWWDGRIIQVQAKSDDFPESPWERYRVQYKTDPTENHLHSPWELYDSEMLWEHPHIDHEIRDKLLSYFTKLDRRERFDIQALNQVAEKLEFANRFPAPFYPELIQSRLKNDYYRSVEGVNHDIMIMLSNAEEYFKITKNVQLVGKIRRISEWFRRKLERI*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain