Glyma02g01570 - SoyBase

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Report for Sequence Feature Glyma02g01570

Feature Type:	gene_model
Chromosome:	Gm02
Start:	1117391
stop:	1119448
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g01570

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G61310	AT	Annotation by Michelle Graham. TAIR10: Cytochrome c oxidase subunit Vc family protein \| chr5:24653543-24653737 REVERSE LENGTH=64	SoyBase	E_val: 2.00E-33	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005746	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial respiratory chain	SoyBase	N/A	ISS
GO:0004129	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cytochrome-c oxidase activity	SoyBase	N/A	ISS
PF05799	PFAM	Cytochrome c oxidase subunit Vc (COX5C)	JGI		ISS
UniRef100_G7KST8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome c oxidase subunit 5C n=1 Tax=Medicago truncatula RepID=G7KST8_MEDTR	SoyBase	E_val: 1.00E-35	ISS
UniRef100_I1JBG2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JBG2_SOYBN	SoyBase	E_val: 8.00E-39	ISS

Expression Patterns of Glyma02g01570

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g01570

Paralog	Evidence	Comments
Glyma10g01600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g01570 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g012400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g01570

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g01570

Limit To All Plant Sequences

>Glyma02g01570.1   sequence type=CDS   gene model=Glyma02g01570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGTCCAAGGATTGCCCATGCTACCTTGAAAGGTCCGAGTGTGGTTAAGGAGATAATAATTGGAATAACACTTGGCTTAGCTGCTGGTAGCGTGTGGAAGATGCACCACTGGAATGAACAGAGGAAAACCAGGACCTTCTACGATTTACTGGAAAAGGGTGAGATCAGTGTTGTTGCAGAGGAACAGTGA

Predicted protein sequences of Glyma02g01570

Limit To All Plant Sequences

>Glyma02g01570.1   sequence type=predicted peptide   gene model=Glyma02g01570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGPRIAHATLKGPSVVKEIIIGITLGLAAGSVWKMHHWNEQRKTRTFYDLLEKGEISVVAEEQ*

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