Glyma02g01560 - SoyBase

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Report for Sequence Feature Glyma02g01560

Feature Type:	gene_model
Chromosome:	Gm02
Start:	1112832
stop:	1115992
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g01560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G16760	AT	Annotation by Michelle Graham. TAIR10: Calcium-dependent phosphotriesterase superfamily protein \| chr2:7275739-7277122 FORWARD LENGTH=327	SoyBase	E_val: 6.00E-143	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF08450	PFAM	SMP-30/Gluconolaconase/LRE-like region	JGI		ISS
UniRef100_I1JBG1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JBG1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9SLE2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calcium-dependent phosphotriesterase-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9SLE2_ARATH	SoyBase	E_val: 3.00E-140	ISS

Expression Patterns of Glyma02g01560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g01560

Paralog	Evidence	Comments
Glyma10g01590	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g01560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g012300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g01560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g01560

Limit To All Plant Sequences

>Glyma02g01560.1   sequence type=CDS   gene model=Glyma02g01560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTCTGTTCTCCAAAATTCCTCAGCCTCCTCCTCCTACTCTCTGCCATACCCATCGGAATCATCGTCACTCTAGAGCGAGCCAAACCCGCCACCCACGTCTACCACTACCACAGTAACGGCTGGTTCCGAGAATGCGCCAAGTGGGATTCTCATAACCGCCGCTTCATTGTTTCCTTCTTCGAAGGTGGTCTTGGTCAGGTTTTGCTGCCGGAGAAGGATTATGAGTCATCGCCGCCGTTGGAGGAAGTCACGGTGGTCAAAGAGACCCACTTGGCCGGAAATGCCTCCTTGGGCATCGCCATTGACGCACCTAGAAATCGAGTCCTCGTCGTTAACGCTGACGTGATCGGTAATCGATACGGCGCGCTTGCAGCATATGATCTCTCCACCTGGAATCGCCTCTTTTTAACCCAACTTAGCGCTCCCAGTGATGAGAAATCATTCGCAGATGATGTTGCAGTTGATGCAGAAGGCAATGCCTATGTTACAGATGCAAAAGGCAATAAAATCTGGAAAGTTGGGGTGGAAGGGAAGCTTATATCAATCATTAGAAACCCACTGTTTACTTCAAAAGAGTGGTATAAGAACTTGGTTGGGCTAAATGGAATAGTTTATCACCCAGATGGGTTCCTGATTGTGATTCACACTTTCAGCGGCAATTTGTTTAAGATTGATTTAACAAAAGGAGAGGAAGTGAAGATAATAAAGTTAAAGGAAGGGACCCTTTCTTTTGGAGATGGTTTAGAACTGTTGTCTCCCACTAAGCTTGTAGTTGCTGGAAATCCTTCTGGAAGATTAGTGGAGAGCACTGATGGGTGGAACACAGCTTCTGTTGTGGGAACATTCTCAGGGCCTAAGCATCGCTTGGCCACAGCAGCAACTGTGAAGGACGGGAAGGTGTATCTGAACCATATGGTTGGAATTGGATACCCAAAAAAGAAGCATGCAATTGTTGAGGCAGTTTTTTAA

Predicted protein sequences of Glyma02g01560

Limit To All Plant Sequences

>Glyma02g01560.1   sequence type=predicted peptide   gene model=Glyma02g01560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFCSPKFLSLLLLLSAIPIGIIVTLERAKPATHVYHYHSNGWFRECAKWDSHNRRFIVSFFEGGLGQVLLPEKDYESSPPLEEVTVVKETHLAGNASLGIAIDAPRNRVLVVNADVIGNRYGALAAYDLSTWNRLFLTQLSAPSDEKSFADDVAVDAEGNAYVTDAKGNKIWKVGVEGKLISIIRNPLFTSKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDLTKGEEVKIIKLKEGTLSFGDGLELLSPTKLVVAGNPSGRLVESTDGWNTASVVGTFSGPKHRLATAATVKDGKVYLNHMVGIGYPKKKHAIVEAVF*

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