Glyma02g01540 - SoyBase

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Report for Sequence Feature Glyma02g01540

Feature Type:	gene_model
Chromosome:	Gm02
Start:	1100819
stop:	1110176
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g01540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G02020	AT	Annotation by Michelle Graham. TAIR10: SET domain-containing protein \| chr4:886693-891743 FORWARD LENGTH=856	SoyBase	E_val: 0	ISS
GO:0000956	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process	SoyBase	N/A	ISS
GO:0006306	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA methylation	SoyBase	N/A	ISS
GO:0006342	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin silencing	SoyBase	N/A	ISS
GO:0006349	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of gene expression by genetic imprinting	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007267	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell-cell signaling	SoyBase	N/A	ISS
GO:0009616	GO-bp	Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing	SoyBase	N/A	ISS
GO:0009960	GO-bp	Annotation by Michelle Graham. GO Biological Process: endosperm development	SoyBase	N/A	ISS
GO:0010048	GO-bp	Annotation by Michelle Graham. GO Biological Process: vernalization response	SoyBase	N/A	ISS
GO:0010050	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative phase change	SoyBase	N/A	ISS
GO:0010267	GO-bp	Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference	SoyBase	N/A	ISS
GO:0016571	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone methylation	SoyBase	N/A	ISS
GO:0035196	GO-bp	Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA	SoyBase	N/A	ISS
GO:0043687	GO-bp	Annotation by Michelle Graham. GO Biological Process: post-translational protein modification	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0003727	GO-mf	Annotation by Michelle Graham. GO Molecular Function: single-stranded RNA binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG1079	KOG	Transcriptional repressor EZH1	JGI		ISS
PTHR22884	Panther	SET DOMAIN PROTEINS	JGI		ISS
PTHR22884:SF18	Panther	ENHANCER OF ZESTE, EZH	JGI		ISS
PF00856	PFAM	SET domain	JGI		ISS
UniRef100_G7ICX6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Histone-lysine N-methyltransferase EZA1 n=1 Tax=Medicago truncatula RepID=G7ICX6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002337A78	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337A78 related cluster n=1 Tax=unknown RepID=UPI0002337A78	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g01540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g01540

Paralog	Evidence	Comments
Glyma10g01580	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g01540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g012100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g01540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g01540

Limit To All Plant Sequences

>Glyma02g01540.2   sequence type=CDS   gene model=Glyma02g01540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGTCCAAACCTACCGACTCGGCTTCCAAACCTCGAAAACAACTTGGAGAGCCAGCAAATGATGGTATTGGAAGCTTGTCCCTCGAGTTAAATCAGTTAAAAAAGCAAATCCAGGCGGAGAGAATTGTGTGCATTAAAGAAAAAATTCGGAGCAATGAGAAGAAGCTACAGTGTCATATGTCAGGAGTCCTGTCAGAAACATCAACAAGGGGTTCTTCACAGACAGAGGAAAATAGGAAAAATCCAATTCTTTCTTCAAGAATTGACCATCCTTTATGTAAATTCAGTGGTTTCTCTCCAGTCTGGGGAGACAAGGACCACAACAATCAAGATGTATTATCTGCTACAAGTATCAAAATGCCTTATATTGAAACACTACCACCATATACCTCTTGGATATTTCTGGACAGAAATCAGAGGATGGCGGAAGATCAGTCAGTGGTTGGAAGAAGACGCATATACTATGATCAACATGGAAGTGAAGCACTGATATGTAGCGACAGTGAGGAGGAGTTAACAGAACCTGAGGAAGAAAAACATGAATTTTCTGAGGCTGAAGATCGTGTCATATGGATGGCATTTGAGGAATATGGGTTAAACAAGGAGGTACCAAATATTGTTAGTGAATTTGTTGGGGGCACCAGTTTAGAAATTCAGGAGAGGTACAAAACTATCAAGGAAAAGAACATTGGAAGGTTGGACCAGCCTTCTCAAAACTCAGGAGAATATGAATCTACTATTGGCATATGTCTAGAGAAAAGCCTGAGTGCTGCATTAGATTCTTTTGATAATCTTTTTTGTCGCCGTTGCCTGATTTTTGACTGTCGTCTGCATGGCTGTTCTCAACCTTTAATATATCATAGTGAAAAGCAGACAGTTTGGTCTGATCCTGAAGGAGACAGGAAACCTTGCAGTGATCAGTGTTACCTTCAGTTAAAGGTAGTAAAAAATGTGACAGAAGATTCAACTTCTGGGTCTGATCAGAATAAGAGAACTACAATTACAGAAGAGGCAGATGTGATATTGGCTCCCTCCATTATAGAGGAACCTAGTAATCAGAGTATAATACCTTTTCAAACAGAAGTTGATTGTCATGGATCTCTCAATTTAAATGTTCCTATCTCAGTGAGTGTGGAAAAACGGAAAGTCCTAAATCAGTCAGACATGTCACCCCGTGACTCAACACTCCATCCCAATGATTGTCAGAATTCTTATAAAAAGCTGAAGGCAATCTCTGATGCTGTAGTTACTGTAAATAGTGATTCTAGCAAGAAAATAAGTTTGGGTGCATGTGGTGAAAGTATACATACAATTACTAGTGCAATTTTGGACAAATCTGTTAAAGATAACTCAATTAAATTAATAGATTCTTCTAGCACTTGCCCTAGTGATGAGCAGGACAAAAGTATTGGTGATGGACCAAAAGATCCTACAAATGAGACAGAATTTAAGATGTCCAATTCAATGGAGGGGATAGTTGATGGGATGCTAAGTCTCTCAGATTGGAAACCTCTGGAGAAAGAACTATACTTAAAGGGAGTAGAACTGTTTGGCAGAAACAGTTGCCTCATAGCAAGGAACTTACTTCCTGGTCTGAAGACTTGTATGGAAATAGCTAGTTACATGCATTCTGGAGGAGTGTCAATGCCCCACGGATCTATTGTTGCTCCTAGTTCAATCATGGAAGAAAAGGGAAAATTTGATGCTGACTGCACAGACCAGGAGATGCCATCTAGGTCACGGTTGCTGAGGAAAAGGGGCAAAACAAGGAAGTTTAAATATTCTTGGAAATCTGCTGGCCACCCATCAATATGGAAAAGAATTGCTGATGGGAAAAACCAATCTTGCAAGCAGTATACACCATGTGGATGTCAGTCAATGTGTGGAAAGGAATGTACTTGTATTAATGGTGGAACTTGCTGTGAGAAATATTGCGGTTGTTCAAAAAGCTGCAAAAATCGGTTCAGAGGATGCCATTGTGCCAAGAGTCAGTGTAGAAGTCGACAATGCCCATGTTTTGCTGCAGGACGGGAATGTGATCCAGATGTCTGTCGGAATTGCTGGGTTAGTTGTGGGGATGGTTCGTTAGGGGAGCCACCTCGGCGTGGAGAAGGGCAATGTGGAAATATGAGGCTTCTATTGAGACAACAACAAAGGATTCTCTTGGCAAAGTCTGATGTTGCAGGATGGGGAGCCTTCTTGAAGAACCCGGTTAACAAAAATGATTACTTAGGAGAGTACACAGGAGAACTGATCTCCCACCGAGAAGCCGATAAGCGTGGGAAAATATACGATCGCGCCAACTCATCTTTTCTTTTTGACTTGAATGATCAGTACGTTCTTGATGCTTATCGCAAAGGAGACAAGTTGAAATTTGCAAACCACTCATCAAACCCCAATTGCTATGCAAAGGTGATGCTGGTTGCTGGAGATCACCGAGTAGGCATATTTGCCAAGGAACACATCGATGCTAGTGAGGAGCTCTTCTATGATTATCGTTATGGTCCCGATCAAGCACCACCATGGGCACGTAAACCTGAGGGTTCTAAGAGAGACGAATCAACAGCTCCTCAAGGCAGGGCTAAGAAACACCAGTCTCATTGA

Predicted protein sequences of Glyma02g01540

Limit To All Plant Sequences

>Glyma02g01540.2   sequence type=predicted peptide   gene model=Glyma02g01540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSKPTDSASKPRKQLGEPANDGIGSLSLELNQLKKQIQAERIVCIKEKIRSNEKKLQCHMSGVLSETSTRGSSQTEENRKNPILSSRIDHPLCKFSGFSPVWGDKDHNNQDVLSATSIKMPYIETLPPYTSWIFLDRNQRMAEDQSVVGRRRIYYDQHGSEALICSDSEEELTEPEEEKHEFSEAEDRVIWMAFEEYGLNKEVPNIVSEFVGGTSLEIQERYKTIKEKNIGRLDQPSQNSGEYESTIGICLEKSLSAALDSFDNLFCRRCLIFDCRLHGCSQPLIYHSEKQTVWSDPEGDRKPCSDQCYLQLKVVKNVTEDSTSGSDQNKRTTITEEADVILAPSIIEEPSNQSIIPFQTEVDCHGSLNLNVPISVSVEKRKVLNQSDMSPRDSTLHPNDCQNSYKKLKAISDAVVTVNSDSSKKISLGACGESIHTITSAILDKSVKDNSIKLIDSSSTCPSDEQDKSIGDGPKDPTNETEFKMSNSMEGIVDGMLSLSDWKPLEKELYLKGVELFGRNSCLIARNLLPGLKTCMEIASYMHSGGVSMPHGSIVAPSSIMEEKGKFDADCTDQEMPSRSRLLRKRGKTRKFKYSWKSAGHPSIWKRIADGKNQSCKQYTPCGCQSMCGKECTCINGGTCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGSLGEPPRRGEGQCGNMRLLLRQQQRILLAKSDVAGWGAFLKNPVNKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNDQYVLDAYRKGDKLKFANHSSNPNCYAKVMLVAGDHRVGIFAKEHIDASEELFYDYRYGPDQAPPWARKPEGSKRDESTAPQGRAKKHQSH*

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