Report for Sequence Feature Glyma02g01520
Feature Type: gene_model
Chromosome: Gm02
Start: 1090727
stop: 1092213
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g01520
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G47360 AT
Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02570.1); Has 58 Blast hits to 55 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:19437820-19438731 FORWARD LENGTH=303
SoyBase E_val: 5.00E-53 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_UPI0002337A77 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002337A77 related cluster n=1 Tax=unknown RepID=UPI0002337A77
SoyBase E_val: 0 ISS
Expression Patterns of Glyma02g01520
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma02g01520
Paralog Evidence Comments
Glyma10g01560 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma02g01520 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.02g011900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g01520
Coding sequences of Glyma02g01520
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g01520.1 sequence type=CDS gene model=Glyma02g01520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATGATGATGATTGGTGGTTGTAAAGAAATGGGTAATTGGAAGAAAAAATGCAGAGAGTTGTTGAGGCCAAGAGAGGTCTTGTACCTCCTCACCATCACAATCCTCAGCCTCCTCCTCCCTTTGTCTTTCTTACTCTTAGCCACTCTCTCCGGTGCCCAATACTACCTTCAAGCCCTCACTTATTATTCCTCACAACCCTTTCCCTATCTTTTCCACCTTGCCCTCAATATCAACCCATGTATTCTTTATTTTCTCGTGTCCATTGTGAGCGTGGGGACCCTGATCCAGGGGCTGATGGGTAAAATCACACTCTTGAGCGAGTTACCCTCCAAGTCCTCGCGTATCTCCACAGCGTGGATTTTGCTATGCGCCTTTCAAGTTTGCGTTGGTTTGGGCATTGAGGGAAGCATTGCGGCCGGGCTTTACGACGATGATGACGTGTCAAGTTTTGGGGCCGAGAGAAGCCTGTTGAGCAGGATGATATTTCTGTTGGGCCTGCACGAGACGACCCACGTTTGGTGTAGGATGGTGGTGAGGCCCGTGGTGGATGACACGGTGTTCGGTGGTGCCCGAAGGGAGAGGTGGGTCGAGAGAGTGGGCCAGGCTGCGGGCCTGGGCACGCTGTGGTGGTGGAGGCTGAGGGAGGAGGTGGAGACTTTGGTGGTTGTGGCCCAAGTGAAGAGTGAGCAACTAATGGATGTGGGCCTTGGTGACTTTGTTGGATGGTGGTTGTATTACCTCATTGTCACTATTGGGATGGTCAGGATCGTGAAGGGTCTCATGTGGATTTTCATGATTTCTCTATGTAGAACAAGGCCAACAATAGAGGTTGAATCGAGTCAGAACGATGACAAGGTGTAA
Predicted protein sequences of Glyma02g01520
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g01520.1 sequence type=predicted peptide gene model=Glyma02g01520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MMMMIGGCKEMGNWKKKCRELLRPREVLYLLTITILSLLLPLSFLLLATLSGAQYYLQALTYYSSQPFPYLFHLALNINPCILYFLVSIVSVGTLIQGLMGKITLLSELPSKSSRISTAWILLCAFQVCVGLGIEGSIAAGLYDDDDVSSFGAERSLLSRMIFLLGLHETTHVWCRMVVRPVVDDTVFGGARRERWVERVGQAAGLGTLWWWRLREEVETLVVVAQVKSEQLMDVGLGDFVGWWLYYLIVTIGMVRIVKGLMWIFMISLCRTRPTIEVESSQNDDKV*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
