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Report for Sequence Feature Glyma02g01510

Feature Type:gene_model
Chromosome:Gm02
Start:1082048
stop:1086455
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g01510
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G02560AT Annotation by Michelle Graham. TAIR10: nuclear encoded CLP protease 5 | chr1:538000-539805 FORWARD LENGTH=298 SoyBaseE_val: 2.00E-175ISS
GO:0000023GO-bp Annotation by Michelle Graham. GO Biological Process: maltose metabolic process SoyBaseN/AISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0018119GO-bp Annotation by Michelle Graham. GO Biological Process: peptidyl-cysteine S-nitrosylation SoyBaseN/AISS
GO:0019252GO-bp Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009532GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid stroma SoyBaseN/AISS
GO:0009534GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0009579GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid SoyBaseN/AISS
GO:0009840GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplastic endopeptidase Clp complex SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0004252GO-mf Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity SoyBaseN/AISS
KOG0840 KOG ATP-dependent Clp protease, proteolytic subunit JGI ISS
PTHR10381Panther PROTEASE FAMILY S14 CLPP PROTEASE JGI ISS
PF00574PFAM Clp protease JGI ISS
UniRef100_I1JBF6UniRef Annotation by Michelle Graham. Most informative UniRef hit: ATP-dependent Clp protease proteolytic subunit n=1 Tax=Glycine max RepID=I1JBF6_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1JBF6UniRef Annotation by Michelle Graham. Best UniRef hit: ATP-dependent Clp protease proteolytic subunit n=1 Tax=Glycine max RepID=I1JBF6_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g01510
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g01510
ParalogEvidenceComments
Glyma10g01550 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g01510 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g011800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g01510
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma02g01510
>Glyma02g01510.2   sequence type=transcript   gene model=Glyma02g01510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCCGTATCGCTCGAGACTTTCCCACAAACAAAAAGCACTGAATTAAGTTCACTGTCGACAAGTTTCGCCCCAACACTCAACTCAGCTCGCTCTTGTTCTTCTTCTCCATTATCAAACGAAGTATAGATATCATATCATTGCAGCTTCATTTTCATCCACCAATTAACTAACAATGGCGCACACATCCCTTTTCACTCCCTCTTCCTCTCTTAGGTTCAACCCTCTTCTTCTTACCTCCACCCCCTCTTCTTCTTCTTCTTCTCGCTCCAACAACCTTTCTTTCCCCGCTCTCTCCAGGAACCTAAGGAAATCGGTAGAAGATAGAAAGATTAACAAAAAATCTGCTGTGAAAGCAGTGTATGGTGATGAATTTTGGACACCTGAGAGGAGTTCACGTCCGGGTATTTGGTCTATAAGGAGTGATTTGCAAGTCCCATCTTCCCCTTATTTCCCTACCTATGCACAAGGGCAAGGGCCACCCCCCATGGTTGCCGAGCGTTTCCAGAGTGTTATAAGTCAGCTTTTTCAATATAGAATAATTCGGTGTGGTGGAGCAGTTGATGACGATATGGCAAACATCATAGTTGCTCAGCTCCTGTACCTTGATGCTGTTGATCCTAACAAGGATATTGTCATGTATGTAAATTCTCCAGGAGGGTCAGTTACAGCTGGAATGGCAATATTTGATACAATGAGGCATATCCGACCTGATGTGTCTACTGTTTGTGTTGGATTAGCGGCTAGTATGGGAGCTTTTCTGCTGAGTGCAGGGACAAAAGGAAAGAGATACAGCTTGCCAAATTCAAGGATAATGATTCATCAACCGCTTGGTGGTGCTCAAGGAGGGCAAACTGACATAGATATTCAGGCTAATGAAATGCTGCATCACAAGGCAAATCTGAATGGATATCTCGCCTATCATACCGGCCAAAGTTTAGATAAGATCAACCAGGATACAGACCGTGACTTTTTCATGAGTGCAAAAGAAGCCAAGGAATATGGACTCATAGATGGAGTCATTATGAATCCTCTCAAAGCTCTCCAGCCATTAGAGGCTGCAGCAGAAGGTAAAGATCGGGCTAGTGTTTGAGCATAAGATTGTTGCACTTGAATTTCCAAGGTATAAAAAGTCAGTATTAGACTGTAAAATGTTTTTGGTTGCTGAGTCCAACTGATTTTTTTTTACGGATGTTGATATCTGTGTCCATGTACCAAAAATGAGGCGAAATTGATACTATTTATTTACTGCTTTAGAGTTTATACTGACAGAAGGTTCTTTAATGGATCCTGCATTTGCTTTTTCCTTCTAGCATTCTTTTTACAAATGGGACAATAGTGTTAACTGTTGAAAAAGAAATGTTTGCTTTACACAAGGTAGTGAAAATGGTACGAACCAACAATGATTAGTTACAT
Coding sequences of Glyma02g01510
>Glyma02g01510.1   sequence type=CDS   gene model=Glyma02g01510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCACACATCCCTTTTCACTCCCTCTTCCTCTCTTAGGTTCAACCCTCTTCTTCTTACCTCCACCCCCTCTTCTTCTTCTTCTTCTCGCTCCAACAACCTTTCTTTCCCCGCTCTCTCCAGCCTTGCTTTGATTTGCAGGAACCTAAGGAAATCGGTAGAAGATAGAAAGATTAACAAAAAATCTGCTGTGAAAGCAGTGTATGGTGATGAATTTTGGACACCTGAGAGGAGTTCACGTCCGGGTATTTGGTCTATAAGGAGTGATTTGCAAGTCCCATCTTCCCCTTATTTCCCTACCTATGCACAAGGGCAAGGGCCACCCCCCATGGTTGCCGAGCGTTTCCAGAGTGTTATAAGTCAGCTTTTTCAATATAGAATAATTCGGTGTGGTGGAGCAGTTGATGACGATATGGCAAACATCATAGTTGCTCAGCTCCTGTACCTTGATGCTGTTGATCCTAACAAGGATATTGTCATGTATGTAAATTCTCCAGGAGGGTCAGTTACAGCTGGAATGGCAATATTTGATACAATGAGGCATATCCGACCTGATGTGTCTACTGTTTGTGTTGGATTAGCGGCTAGTATGGGAGCTTTTCTGCTGAGTGCAGGGACAAAAGGAAAGAGATACAGCTTGCCAAATTCAAGGATAATGATTCATCAACCGCTTGGTGGTGCTCAAGGAGGGCAAACTGACATAGATATTCAGGCTAATGAAATGCTGCATCACAAGGCAAATCTGAATGGATATCTCGCCTATCATACCGGCCAAAGTTTAGATAAGATCAACCAGGATACAGACCGTGACTTTTTCATGAGTGCAAAAGAAGCCAAGGAATATGGACTCATAGATGGAGTCATTATGAATCCTCTCAAAGCTCTCCAGCCATTAGAGGCTGCAGCAGAAGGTAAAGATCGGGCTAGTGTTTGA

>Glyma02g01510.2   sequence type=CDS   gene model=Glyma02g01510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCACACATCCCTTTTCACTCCCTCTTCCTCTCTTAGGTTCAACCCTCTTCTTCTTACCTCCACCCCCTCTTCTTCTTCTTCTTCTCGCTCCAACAACCTTTCTTTCCCCGCTCTCTCCAGGAACCTAAGGAAATCGGTAGAAGATAGAAAGATTAACAAAAAATCTGCTGTGAAAGCAGTGTATGGTGATGAATTTTGGACACCTGAGAGGAGTTCACGTCCGGGTATTTGGTCTATAAGGAGTGATTTGCAAGTCCCATCTTCCCCTTATTTCCCTACCTATGCACAAGGGCAAGGGCCACCCCCCATGGTTGCCGAGCGTTTCCAGAGTGTTATAAGTCAGCTTTTTCAATATAGAATAATTCGGTGTGGTGGAGCAGTTGATGACGATATGGCAAACATCATAGTTGCTCAGCTCCTGTACCTTGATGCTGTTGATCCTAACAAGGATATTGTCATGTATGTAAATTCTCCAGGAGGGTCAGTTACAGCTGGAATGGCAATATTTGATACAATGAGGCATATCCGACCTGATGTGTCTACTGTTTGTGTTGGATTAGCGGCTAGTATGGGAGCTTTTCTGCTGAGTGCAGGGACAAAAGGAAAGAGATACAGCTTGCCAAATTCAAGGATAATGATTCATCAACCGCTTGGTGGTGCTCAAGGAGGGCAAACTGACATAGATATTCAGGCTAATGAAATGCTGCATCACAAGGCAAATCTGAATGGATATCTCGCCTATCATACCGGCCAAAGTTTAGATAAGATCAACCAGGATACAGACCGTGACTTTTTCATGAGTGCAAAAGAAGCCAAGGAATATGGACTCATAGATGGAGTCATTATGAATCCTCTCAAAGCTCTCCAGCCATTAGAGGCTGCAGCAGAAGGTAAAGATCGGGCTAGTGTTTGA
Predicted protein sequences of Glyma02g01510
>Glyma02g01510.1   sequence type=predicted peptide   gene model=Glyma02g01510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHTSLFTPSSSLRFNPLLLTSTPSSSSSSRSNNLSFPALSSLALICRNLRKSVEDRKINKKSAVKAVYGDEFWTPERSSRPGIWSIRSDLQVPSSPYFPTYAQGQGPPPMVAERFQSVISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPNKDIVMYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLDKINQDTDRDFFMSAKEAKEYGLIDGVIMNPLKALQPLEAAAEGKDRASV*

>Glyma02g01510.2   sequence type=predicted peptide   gene model=Glyma02g01510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHTSLFTPSSSLRFNPLLLTSTPSSSSSSRSNNLSFPALSRNLRKSVEDRKINKKSAVKAVYGDEFWTPERSSRPGIWSIRSDLQVPSSPYFPTYAQGQGPPPMVAERFQSVISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPNKDIVMYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLDKINQDTDRDFFMSAKEAKEYGLIDGVIMNPLKALQPLEAAAEGKDRASV*






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