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Report for Sequence Feature Glyma02g01490

Feature Type:gene_model
Chromosome:Gm02
Start:1073745
stop:1074670
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g01490
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G02550AT Annotation by Michelle Graham. TAIR10: Plant invertase/pectin methylesterase inhibitor superfamily protein | chr1:536483-537211 FORWARD LENGTH=242 SoyBaseE_val: 1.00E-11ISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0004857GO-mf Annotation by Michelle Graham. GO Molecular Function: enzyme inhibitor activity SoyBaseN/AISS
GO:0030599GO-mf Annotation by Michelle Graham. GO Molecular Function: pectinesterase activity SoyBaseN/AISS
GO:0046910GO-mf Annotation by Michelle Graham. GO Molecular Function: pectinesterase inhibitor activity SoyBaseN/AISS
PF04043PFAM Plant invertase/pectin methylesterase inhibitor JGI ISS
UniRef100_G7ICW8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pectinesterase inhibitor n=1 Tax=Medicago truncatula RepID=G7ICW8_MEDTR SoyBaseE_val: 2.00E-57ISS
UniRef100_I1JBF5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JBF5_SOYBN SoyBaseE_val: 8.00E-156ISS

Expression Patterns of Glyma02g01490
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g01490
ParalogEvidenceComments
Glyma10g01530 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g01490 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g011500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g01490
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g01490
>Glyma02g01490.1   sequence type=CDS   gene model=Glyma02g01490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCACTTGAGATTCAACAAAACCACCCTTGTCCTCATCGGAACCCTCTCTTGCCTCCTCCTGTCCATCACTGCCGTCCCCTCAACTCGCGTCTTGGAACTCGCTCCCAGCGAAGCCCCCACCGCGGAGCCTATAGCCTCCGGCATCAGCCTCTTCGACAATCTTCTTGCCAAGGAATCAAGCCCCATGATTCTGAAATTCTGCACCGGCACCGAGAACCCCACCCTCTGCGCCGAAACCATTGCACCATACCTAACCGGCACATTCGACCCGATCCAGGCGCTAGAGACCGAGATCAACGCGACCCTGGAGAAGGCGGAGGAGATCGCCGGCAACATCAAGAAGATGCTAGACGACCCGACCACGACGAAGAACGCCATGGACGCGTTGGGCATCTGCCAGTCGCAGTACGATAACATTCTAGATAACATAAAGGAGACTGTGGAGTTGGTGGGGAACCAGAACGTGGTGGATGCTTGGTACAGGTTCAGCTCTGTCCTTTCGTACAAAGAAGCATGCGAGGATGCTTTCAAAGAGTCTCCCGGGGTCGACATGCCCTTCCCTGAAGATAACACCAAGCTGTTCCAGTTGAGCGGCAATTGCCTCGCCGTCATGGACGGCATTGTTAACAATCACAAGATGTAA
Predicted protein sequences of Glyma02g01490
>Glyma02g01490.1   sequence type=predicted peptide   gene model=Glyma02g01490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDHLRFNKTTLVLIGTLSCLLLSITAVPSTRVLELAPSEAPTAEPIASGISLFDNLLAKESSPMILKFCTGTENPTLCAETIAPYLTGTFDPIQALETEINATLEKAEEIAGNIKKMLDDPTTTKNAMDALGICQSQYDNILDNIKETVELVGNQNVVDAWYRFSSVLSYKEACEDAFKESPGVDMPFPEDNTKLFQLSGNCLAVMDGIVNNHKM*






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