Report for Sequence Feature Glyma02g01470
Feature Type: gene_model
Chromosome: Gm02
Start: 1059130
stop: 1061604
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g01470
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G01995 AT
Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:873075-874619 FORWARD LENGTH=258
SoyBase E_val: 3.00E-99 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_H1ZX96 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Td6ITP3 protein (Fragment) n=1 Tax=Triticum durum RepID=H1ZX96_9POAL
SoyBase E_val: 6.00E-36 ISS
UniRef100_I1JBF3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JBF3_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma02g01470
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma02g01470
Paralog Evidence Comments
Glyma10g01510 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma02g01470 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.02g011300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g01470
Coding sequences of Glyma02g01470
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g01470.1 sequence type=CDS gene model=Glyma02g01470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGACCGCGCTAGGTGTAGTTGGTGGTAGTGGTGCCCCAGTGCCAGTGGTATGTTCTAGTGTTAGGAACACACGGTTTCGCGTATCCTTCTCTTCTTCTCCGTCATCGGGACCCAAAACGGTGGAACAAGTGGGAATTGCTGCTCCGAAATCTGAATACAAGCCCGGTGTGTTTGATGACTTGTTTCTTAATTTGTTCCGCAACAAATTGGTACAGGAGGTGGGTTGGGACTCGGAGAAACCTGGATATGATGGACTAATTGAAGTTGCCAATCGTCTAATGATGAAGGGCACTACCAATACTGCTACCGTGGAAGCAGCGGTACGAATATTGAGATCTCTATTCCCTCCATATCTTTTGGAGCTCTATAAAATGCTCATAGTTCCCATAGGAGGAGGCAAAATTGCAGCTATGATGGTTGCAAGGGTTACTGTACTGACTTGTCAATGGCTCATGGGCCCCTGCAAACTCAATTCTGTAGACCTACCAGATGGAATCTCATGCAGTAGTGGGGTGTATGTGGAAAGATGCAAGTATCTGGAGGAAAGCAAGTGTGTTGGTATTTGCACCAACACCTGTAAATTTCCGACACAGAGCTTCTTTAAGGATCATATGGGGGTTCCACTACTTATGGAGCCGAACTTTGGCGATTACAGCTGTCAGTTCAAATTTGGAGTTCTTCCGCCACTGGATGATACGATCGTGAAGGAGCCTTGCTTGGAAGCATGTCCAAATGCTTCCCAACGACGAACGGTTGCCAGAAATATTGATATAACTGCGTGCCCAAAGACATGA
Predicted protein sequences of Glyma02g01470
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g01470.1 sequence type=predicted peptide gene model=Glyma02g01470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MTALGVVGGSGAPVPVVCSSVRNTRFRVSFSSSPSSGPKTVEQVGIAAPKSEYKPGVFDDLFLNLFRNKLVQEVGWDSEKPGYDGLIEVANRLMMKGTTNTATVEAAVRILRSLFPPYLLELYKMLIVPIGGGKIAAMMVARVTVLTCQWLMGPCKLNSVDLPDGISCSSGVYVERCKYLEESKCVGICTNTCKFPTQSFFKDHMGVPLLMEPNFGDYSCQFKFGVLPPLDDTIVKEPCLEACPNASQRRTVARNIDITACPKT*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
