Glyma02g01450 - SoyBase

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Report for Sequence Feature Glyma02g01450

Feature Type:	gene_model
Chromosome:	Gm02
Start:	1047228
stop:	1055047
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g01450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G62370	AT	Annotation by Michelle Graham. TAIR10: heme binding \| chr3:23080789-23083234 FORWARD LENGTH=361	SoyBase	E_val: 0	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0020037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heme binding	SoyBase	N/A	ISS
PF09459	PFAM	Ethylbenzene dehydrogenase	JGI		ISS
UniRef100_I1JBE8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JBE8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9LZQ3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Heme binding protein n=3 Tax=Arabidopsis thaliana RepID=Q9LZQ3_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g01450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g01450

Paralog	Evidence	Comments
Glyma10g01480	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g01450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g011100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g01450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g01450

Limit To All Plant Sequences

>Glyma02g01450.2   sequence type=transcript   gene model=Glyma02g01450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGTCTTCACTCTATATTTATTTATTAAAGTAAGAGAACATCAGGCACTTAATTCTTTGGAGAAGATGCTCTGGATAGATGACAAGGGCAGGTGGGGTGTTTAACGTGTATATTTCATTTCACGGTTGGGTAAAGGCAGAATGAAAGTGCAGGCGAAAAGGGGGAAAACAAATTGGCTAGTGCTGTGCGTCACGTCTAATATCTTAGTTTGTCTGATCTAATCTAAATTTTCTCGCAAACAGAAGAAAAGTCAAGCGCGGCACGAATCGCGATCTTTCCTTCTTTCTTTCTTTCGTTCCTTCACAATCCTACCAGCCGCCAAGCCGCAGAGTCAACTTGTACAAATGCCCACCGAATCCATTAAAACTAAAAAATCTTCTACCACGAACACTTGTCTTCATTCTTCAACCTTCGTTTCGTTTCTACCACTCCATTCCAGAATGCTTCGTTACCTGTTGGTGTTCTTCTTATTGGGCTTGGGAACCCGGGTGGAGTCACACGAGGAATCGGGTCATTGGAGCTGCGAGTCCGAGTCGGAGATCCGAGTCGAGACTGAGTTCAAACCCGGTGTAATCACACTGGATGGTCACGCTGATGATTGGAAGGACATTGATGGGTCCTACTTTCCCCTCCTTCCCGCCCTTGACCCAGATGCTGAAAATGAATTCAAAGGGGGAAAGATGAGCGTTAAAAGTGTCCATGATGGCCGCGATATCTTCTTTCTGCTGCAAGTAGATGGTGACTATGCCTACTCTAAAGGTGAAAGCAATAAATGTCCATCTGTTGCTCTCATGTTTCAAATTGGAGATAGTGCCTCTTATCATGATATGGGTGGCTGTAAAGAACATTCGACCTCATGCACTGACAAGACCTGCAAAGGTCATGAAGTTGACATTATGCACTTTTCGATAGGAAGTGCTATTCCAGGACGACTTTACGGTGGCAATCCCCTAGACAATAGAGATGGGAATGGTGGCGATAGGTTATGAGCTGAAAAATTCCTTGACTTTCAATTATGATAGTCGTGGGCTATCTTATTTGTTGGT

>Glyma02g01450.3   sequence type=transcript   gene model=Glyma02g01450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGTCTTCACTCTATATTTATTTATTAAAGTAAGAGAACATCAGGCACTTAATTCTTTGGAGAAGATGCTCTGGATAGATGACAAGGGCAGGTGGGGTGTTTAACGTGTATATTTCATTTCACGGTTGGGTAAAGGCAGAATGAAAGTGCAGGCGAAAAGGGGGAAAACAAATTGGCTAGTGCTGTGCGTCACGTCTAATATCTTAGTTTGTCTGATCTAATCTAAATTTTCTCGCAAACAGAAGAAAAGTCAAGCGCGGCACGAATCGCGATCTTTCCTTCTTTCTTTCTTTCGTTCCTTCACAATCCTACCAGCCGCCAAGCCGCAGAGTCAACTTGTACAAATGCCCACCGAATCCATTAAAACTAAAAAATCTTCTACCACGAACACTTGTCTTCATTCTTCAACCTTCGTTTCGTTTCTACCACTCCATTCCAGAATGCTTCGTTACCTGTTGGTGTTCTTCTTATTGGGCTTGGGAACCCGGGTGGAGTCACACGAGGAATCGGGTCATTGGAGCTGCGAGTCCGAGTCGGAGATCCGAGTCGAGACTGAGTTCAAACCCGGTGTAATCACACTGGATGGTCACGCTGATGATTGGAAGGACATTGATGGGTCCTACTTTCCCCTCCTTCCCGCCCTTGACCCAGATGCTGAAAATGAATTCAAAGGGGGAAAGATGAGCGTTAAAAGTGTCCATGATGGCCGCGATATCTTCTTTCTGCTGCAAGTAGATGGTGACTATGCCTACTCTAAAGGTGAAAGCAATAAATGTCCATCTGTTGCTCTCATGTTTCAAATTGGAGATAGTGCCTCTTATCATGATATGGGTGGCTGTAAAGAACATTCGACCTCATGCACTGACAAGACCTGCAAAGGTCATGAAGTTGACATTATGCACTTTTCGATAGGAAGTGCTATTCCAGGACGACTTTACGGTGGCAATCCCCTAGACAATAGAGATGGGAATGGTGGCGATAGGTTTGGTCACTTGGTTGATCTATATGCTTGGAATCCACATTGTAGATACTTGGATGGAATTGGTCCTCCAGGTTCTGGCACATAATGTTACTCCTCCTTTGAATTATGGATCTGCCACCTTCATGAACTTACCTGTCAAAGTCCCAGTATTCTAAGTAGCAAAAAGCTTTGAACTTCTTTATCCACATCCATTCAAGAAATTGTGAGGACTC

>Glyma02g01450.4   sequence type=transcript   gene model=Glyma02g01450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGTCTTCACTCTATATTTATTTATTAAAGTAAGAGAACATCAGGCACTTAATTCTTTGGAGAAGATGCTCTGGATAGATGACAAGGGCAGGTGGGGTGTTTAACGTGTATATTTCATTTCACGGTTGGGTAAAGGCAGAATGAAAGTGCAGGCGAAAAGGGGGAAAACAAATTGGCTAGTGCTGTGCGTCACGTCTAATATCTTAGTTTGTCTGATCTAATCTAAATTTTCTCGCAAACAGAAGAAAAGTCAAGCGCGGCACGAATCGCGATCTTTCCTTCTTTCTTTCTTTCGTTCCTTCACAATCCTACCAGCCGCCAAGCCGCAGAGTCAACTTGTACAAATGCCCACCGAATCCATTAAAACTAAAAAATCTTCTACCACGAACACTTGTCTTCATTCTTCAACCTTCGTTTCGTTTCTACCACTCCATTCCAGAATGCTTCGTTACCTGTTGGTGTTCTTCTTATTGGGCTTGGGAACCCGGGTGGAGTCACACGAGGAATCGGGTCATTGGAGCTGCGAGTCCGAGTCGGAGATCCGAGTCGAGACTGAGTTCAAACCCGGTGTAATCACACTGGATGGTCACGCTGATGATTGGAAGGACATTGATGGGTCCTACTTTCCCCTCCTTCCCGCCCTTGACCCAGATGCTGAAAATGAATTCAAAGGGGGAAAGATGAGCGTTAAAAGTGTCCATGATGGCCGCGATATCTTCTTTCTGCTGCAAGTAGATGGTGACTATGCCTACTCTAAAGGTGAAAGCAATAAATGTCCATCTGTTGCTCTCATGTTTCAAATTGGAGATAGTGCCTCTTATCATGATATGGGTGGCTGTAAAGAACATTCGACCTCATGCACTGACAAGACCTGCAAAGGTCATGAAGTTGACATTATGCACTTTTCGATAGGAAGTGCTATTCCAGGACGACTTTACGGTGGCAATCCCCTAGACAATAGAGATGGGAATGGTGGCGATAGGTTTGGTCACTTGGTTGATCTATATGCTTGGAATCCACATTGTAGATACTTGGATGGAATTGGTCCTCCAGGTTCTGCTAATGATTCAAGTGCGCAGAATGACTGGAAAGGTGCTTGGTGGCATAGCAGCTTCACAGTTCACTCAGGATTCGTAGAGGATGAGAGTCCATATGCAGATAATGGAAAAAAGGGCACATACTTTTTTGAATTCTCGAGGTCTTTGAGGACTATGGATCATCTTCAACAGGTTGGAACTTAGAAAGTAATTTGATATTCATAAGTTTTATAGGCTAAGAGTTTGCATTGATTTTTTCAGATTTTTTTCCCAATTAGCTGAATTTTTTGTTCACAAGTTCTTTTTCGATTAATTTTTGGGATCATTTGTAAATCTAATGGATTGTGGATGAAAAAACATATGAAATTATTTATC

Coding sequences of Glyma02g01450

Limit To All Plant Sequences

>Glyma02g01450.1   sequence type=CDS   gene model=Glyma02g01450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCCACCGAATCCATTAAAACTAAAAAATCTTCTACCACGAACACTTGTCTTCATTCTTCAACCTTCGTTTCGTTTCTACCACTCCATTCCAGAATGCTTCGTTACCTGTTGGTGTTCTTCTTATTGGGCTTGGGAACCCGGGTGGAGTCACACGAGGAATCGGGTCATTGGAGCTGCGAGTCCGAGTCGGAGATCCGAGTCGAGACTGAGTTCAAACCCGGTGTAATCACACTGGATGGTCACGCTGATGATTGGAAGGACATTGATGGGTCCTACTTTCCCCTCCTTCCCGCCCTTGACCCAGATGCTGAAAATGAATTCAAAGGGGGAAAGATGAGCGTTAAAAGTGTCCATGATGGCCGCGATATCTTCTTTCTGCTGCAAGTAGATGGTGACTATGCCTACTCTAAAGGTGAAAGCAATAAATGTCCATCTGTTGCTCTCATGTTTCAAATTGGAGATAGTGCCTCTTATCATGATATGGGTGGCTGTAAAGAACATTCGACCTCATGCACTGACAAGACCTGCAAAGGTCATGAAGTTGACATTATGCACTTTTCGATAGGAAGTGCTATTCCAGGACGACTTTACGGTGGCAATCCCCTAGACAATAGAGATGGGAATGGTGGCGATAGGTTTGGTCACTTGGTTGATCTATATGCTTGGAATCCACATTGTAGATACTTGGATGGAATTGGTCCTCCAGGTTCTGCTAATGATTCAAGTGCGCAGAATGACTGGAAAGGTGCTTGGTGGCATAGCAGCTTCACAGTTCACTCAGGATTCGTAGAGGATGAGAGTCCATATGCAGATAATGGAAAAAAGGGCACATACTTTTTTGAATTCTCGAGGTCTTTGAGGACTATGGATCATCTTCAACAGGACGTGCAATTTAACATTGGTGGATCCAGTAAGATGTCTGTTGCATTCTGGTATCCAGTAGATGGTCAACCTTGGCATGGTTCTGGGCACTACTCTGTTTACTGTGATTGGGTTCCCATTGACATATCTGTTGGTAAATCTTTGAATGGCAAGTCAGTAGATGCAGCATCAAATAGCTCGTGGAATGTTGCTAGTGCCTTTTCTGTTATACTATCAGTAGCAGCACTTTGTGTGTCTGTTTTTGTGAGCTATAGGGTGTTCAGCCCCAAGAGTGTCTCTTTTACACCGATAGAGAACAACAACCTTTAA

>Glyma02g01450.2   sequence type=CDS   gene model=Glyma02g01450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCCACCGAATCCATTAAAACTAAAAAATCTTCTACCACGAACACTTGTCTTCATTCTTCAACCTTCGTTTCGTTTCTACCACTCCATTCCAGAATGCTTCGTTACCTGTTGGTGTTCTTCTTATTGGGCTTGGGAACCCGGGTGGAGTCACACGAGGAATCGGGTCATTGGAGCTGCGAGTCCGAGTCGGAGATCCGAGTCGAGACTGAGTTCAAACCCGGTGTAATCACACTGGATGGTCACGCTGATGATTGGAAGGACATTGATGGGTCCTACTTTCCCCTCCTTCCCGCCCTTGACCCAGATGCTGAAAATGAATTCAAAGGGGGAAAGATGAGCGTTAAAAGTGTCCATGATGGCCGCGATATCTTCTTTCTGCTGCAAGTAGATGGTGACTATGCCTACTCTAAAGGTGAAAGCAATAAATGTCCATCTGTTGCTCTCATGTTTCAAATTGGAGATAGTGCCTCTTATCATGATATGGGTGGCTGTAAAGAACATTCGACCTCATGCACTGACAAGACCTGCAAAGGTCATGAAGTTGACATTATGCACTTTTCGATAGGAAGTGCTATTCCAGGACGACTTTACGGTGGCAATCCCCTAGACAATAGAGATGGGAATGGTGGCGATAGGTTATGA

>Glyma02g01450.3   sequence type=CDS   gene model=Glyma02g01450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCCACCGAATCCATTAAAACTAAAAAATCTTCTACCACGAACACTTGTCTTCATTCTTCAACCTTCGTTTCGTTTCTACCACTCCATTCCAGAATGCTTCGTTACCTGTTGGTGTTCTTCTTATTGGGCTTGGGAACCCGGGTGGAGTCACACGAGGAATCGGGTCATTGGAGCTGCGAGTCCGAGTCGGAGATCCGAGTCGAGACTGAGTTCAAACCCGGTGTAATCACACTGGATGGTCACGCTGATGATTGGAAGGACATTGATGGGTCCTACTTTCCCCTCCTTCCCGCCCTTGACCCAGATGCTGAAAATGAATTCAAAGGGGGAAAGATGAGCGTTAAAAGTGTCCATGATGGCCGCGATATCTTCTTTCTGCTGCAAGTAGATGGTGACTATGCCTACTCTAAAGGTGAAAGCAATAAATGTCCATCTGTTGCTCTCATGTTTCAAATTGGAGATAGTGCCTCTTATCATGATATGGGTGGCTGTAAAGAACATTCGACCTCATGCACTGACAAGACCTGCAAAGGTCATGAAGTTGACATTATGCACTTTTCGATAGGAAGTGCTATTCCAGGACGACTTTACGGTGGCAATCCCCTAGACAATAGAGATGGGAATGGTGGCGATAGGTTTGGTCACTTGGTTGATCTATATGCTTGGAATCCACATTGTAGATACTTGGATGGAATTGGTCCTCCAGGTTCTGGCACATAA

>Glyma02g01450.4   sequence type=CDS   gene model=Glyma02g01450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCCACCGAATCCATTAAAACTAAAAAATCTTCTACCACGAACACTTGTCTTCATTCTTCAACCTTCGTTTCGTTTCTACCACTCCATTCCAGAATGCTTCGTTACCTGTTGGTGTTCTTCTTATTGGGCTTGGGAACCCGGGTGGAGTCACACGAGGAATCGGGTCATTGGAGCTGCGAGTCCGAGTCGGAGATCCGAGTCGAGACTGAGTTCAAACCCGGTGTAATCACACTGGATGGTCACGCTGATGATTGGAAGGACATTGATGGGTCCTACTTTCCCCTCCTTCCCGCCCTTGACCCAGATGCTGAAAATGAATTCAAAGGGGGAAAGATGAGCGTTAAAAGTGTCCATGATGGCCGCGATATCTTCTTTCTGCTGCAAGTAGATGGTGACTATGCCTACTCTAAAGGTGAAAGCAATAAATGTCCATCTGTTGCTCTCATGTTTCAAATTGGAGATAGTGCCTCTTATCATGATATGGGTGGCTGTAAAGAACATTCGACCTCATGCACTGACAAGACCTGCAAAGGTCATGAAGTTGACATTATGCACTTTTCGATAGGAAGTGCTATTCCAGGACGACTTTACGGTGGCAATCCCCTAGACAATAGAGATGGGAATGGTGGCGATAGGTTTGGTCACTTGGTTGATCTATATGCTTGGAATCCACATTGTAGATACTTGGATGGAATTGGTCCTCCAGGTTCTGCTAATGATTCAAGTGCGCAGAATGACTGGAAAGGTGCTTGGTGGCATAGCAGCTTCACAGTTCACTCAGGATTCGTAGAGGATGAGAGTCCATATGCAGATAATGGAAAAAAGGGCACATACTTTTTTGAATTCTCGAGGTCTTTGAGGACTATGGATCATCTTCAACAGGTTGGAACTTAG

Predicted protein sequences of Glyma02g01450

Limit To All Plant Sequences

>Glyma02g01450.1   sequence type=predicted peptide   gene model=Glyma02g01450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPTESIKTKKSSTTNTCLHSSTFVSFLPLHSRMLRYLLVFFLLGLGTRVESHEESGHWSCESESEIRVETEFKPGVITLDGHADDWKDIDGSYFPLLPALDPDAENEFKGGKMSVKSVHDGRDIFFLLQVDGDYAYSKGESNKCPSVALMFQIGDSASYHDMGGCKEHSTSCTDKTCKGHEVDIMHFSIGSAIPGRLYGGNPLDNRDGNGGDRFGHLVDLYAWNPHCRYLDGIGPPGSANDSSAQNDWKGAWWHSSFTVHSGFVEDESPYADNGKKGTYFFEFSRSLRTMDHLQQDVQFNIGGSSKMSVAFWYPVDGQPWHGSGHYSVYCDWVPIDISVGKSLNGKSVDAASNSSWNVASAFSVILSVAALCVSVFVSYRVFSPKSVSFTPIENNNL*

>Glyma02g01450.2   sequence type=predicted peptide   gene model=Glyma02g01450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPTESIKTKKSSTTNTCLHSSTFVSFLPLHSRMLRYLLVFFLLGLGTRVESHEESGHWSCESESEIRVETEFKPGVITLDGHADDWKDIDGSYFPLLPALDPDAENEFKGGKMSVKSVHDGRDIFFLLQVDGDYAYSKGESNKCPSVALMFQIGDSASYHDMGGCKEHSTSCTDKTCKGHEVDIMHFSIGSAIPGRLYGGNPLDNRDGNGGDRL*

>Glyma02g01450.3   sequence type=predicted peptide   gene model=Glyma02g01450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPTESIKTKKSSTTNTCLHSSTFVSFLPLHSRMLRYLLVFFLLGLGTRVESHEESGHWSCESESEIRVETEFKPGVITLDGHADDWKDIDGSYFPLLPALDPDAENEFKGGKMSVKSVHDGRDIFFLLQVDGDYAYSKGESNKCPSVALMFQIGDSASYHDMGGCKEHSTSCTDKTCKGHEVDIMHFSIGSAIPGRLYGGNPLDNRDGNGGDRFGHLVDLYAWNPHCRYLDGIGPPGSGT*

>Glyma02g01450.4   sequence type=predicted peptide   gene model=Glyma02g01450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPTESIKTKKSSTTNTCLHSSTFVSFLPLHSRMLRYLLVFFLLGLGTRVESHEESGHWSCESESEIRVETEFKPGVITLDGHADDWKDIDGSYFPLLPALDPDAENEFKGGKMSVKSVHDGRDIFFLLQVDGDYAYSKGESNKCPSVALMFQIGDSASYHDMGGCKEHSTSCTDKTCKGHEVDIMHFSIGSAIPGRLYGGNPLDNRDGNGGDRFGHLVDLYAWNPHCRYLDGIGPPGSANDSSAQNDWKGAWWHSSFTVHSGFVEDESPYADNGKKGTYFFEFSRSLRTMDHLQQVGT*

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