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Report for Sequence Feature Glyma02g01420

Feature Type:gene_model
Chromosome:Gm02
Start:1024239
stop:1026604
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G47260AT Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 23 | chr2:19405045-19406446 REVERSE LENGTH=337 SoyBaseE_val: 3.00E-68ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009624GO-bp Annotation by Michelle Graham. GO Biological Process: response to nematode SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
PF03106PFAM WRKY DNA -binding domain JGI ISS
UniRef100_I1JBE7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JBE7_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q2PJR6UniRef Annotation by Michelle Graham. Most informative UniRef hit: WRKY54 n=1 Tax=Glycine max RepID=Q2PJR6_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma10g01450 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g010900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma02g01420.1   sequence type=CDS   gene model=Glyma02g01420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAAGAAGGAGATGGCTGTGAAAACTGAGGATGCGATTGGGTCCTCTTCTTTCCCTTGTTATAATTCAAACCTTTATCCATTCTCGAACGCGTTTGATTTCTCTGAGGTGGACAAAAGCTCTTTAGGGTTTATGGAGTTACTGGGTGTGCAGGACTATAGTCCTCTGCCTGAGTTACCACAGCTTTCAACTGTGTCCGTGCAACCTCATCACTCTACAGTTAAGGTTCCGTCTGATAACGGGAAAGAGTGTTCTGAGGTGTTGAATCACCAACCTGCCACTCCAAACTCTTCTTCCATTTCATCCGCGTCCAGTGATGCAGTCAATGATGAACAGAATAAGACTCTTCTAGACCAAGCAGAAGAAGATGATGATGAAGAAGAAGGACAACAAAAGACTAAGAAACAGTTGAAGCCTAAGAAGACAAATCAGAAGAGACAGAGAGAACCAAGATTCGCATTCATGACGAAAAGCGAGGTCGATCATCTGGAAGATGGATACAGATGGAGAAAGTACGGTCAAAAGGCCGTGAAAAACAGCCCCTTTCCCAGGAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAGCGTGTGGAGCGATCTTTCACTGATCCAAGCGTTGTAGTGACAACCTATGAAGGCCAACACACACATCCAAGCCCAGTTATGCCTCGTTCAGGTGTCTCCGCTGGATACGCCAACAACTTCGGTTCAGTTTTGCCACCGGGAAACTACTTATCCCAGTATCAGCACTACCACCACCAACAACAACAACAGCATCTTGTCAACACATTGTCCTCTTTGGGTTTTCCTTACAATGATTCTTCATCTCCAAAGAACGCTGTTTTTACTCAAGAGAGACGGCTTTGCAGTAATCACGGGACGAATGCGTTTCTGAGGGACCATGGGCTTCTTCAAGATGTTGTTCCTTCACACATGTTGAAAGAAGAGTAG

>Glyma02g01420.1   sequence type=predicted peptide   gene model=Glyma02g01420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKKEMAVKTEDAIGSSSFPCYNSNLYPFSNAFDFSEVDKSSLGFMELLGVQDYSPLPELPQLSTVSVQPHHSTVKVPSDNGKECSEVLNHQPATPNSSSISSASSDAVNDEQNKTLLDQAEEDDDEEEGQQKTKKQLKPKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSVSCNVKKRVERSFTDPSVVVTTYEGQHTHPSPVMPRSGVSAGYANNFGSVLPPGNYLSQYQHYHHQQQQQHLVNTLSSLGFPYNDSSSPKNAVFTQERRLCSNHGTNAFLRDHGLLQDVVPSHMLKEE*







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