Glyma02g01420 - SoyBase

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Report for Sequence Feature Glyma02g01420

Feature Type:	gene_model
Chromosome:	Gm02
Start:	1024239
stop:	1026604
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g01420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G47260	AT	Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 23 \| chr2:19405045-19406446 REVERSE LENGTH=337	SoyBase	E_val: 3.00E-68	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009624	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nematode	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_I1JBE7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JBE7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2PJR6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WRKY54 n=1 Tax=Glycine max RepID=Q2PJR6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g01420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g01420

Paralog	Evidence	Comments
Glyma10g01450	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g01420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g010900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g01420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g01420

Limit To All Plant Sequences

>Glyma02g01420.1   sequence type=CDS   gene model=Glyma02g01420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAAGAAGGAGATGGCTGTGAAAACTGAGGATGCGATTGGGTCCTCTTCTTTCCCTTGTTATAATTCAAACCTTTATCCATTCTCGAACGCGTTTGATTTCTCTGAGGTGGACAAAAGCTCTTTAGGGTTTATGGAGTTACTGGGTGTGCAGGACTATAGTCCTCTGCCTGAGTTACCACAGCTTTCAACTGTGTCCGTGCAACCTCATCACTCTACAGTTAAGGTTCCGTCTGATAACGGGAAAGAGTGTTCTGAGGTGTTGAATCACCAACCTGCCACTCCAAACTCTTCTTCCATTTCATCCGCGTCCAGTGATGCAGTCAATGATGAACAGAATAAGACTCTTCTAGACCAAGCAGAAGAAGATGATGATGAAGAAGAAGGACAACAAAAGACTAAGAAACAGTTGAAGCCTAAGAAGACAAATCAGAAGAGACAGAGAGAACCAAGATTCGCATTCATGACGAAAAGCGAGGTCGATCATCTGGAAGATGGATACAGATGGAGAAAGTACGGTCAAAAGGCCGTGAAAAACAGCCCCTTTCCCAGGAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAGCGTGTGGAGCGATCTTTCACTGATCCAAGCGTTGTAGTGACAACCTATGAAGGCCAACACACACATCCAAGCCCAGTTATGCCTCGTTCAGGTGTCTCCGCTGGATACGCCAACAACTTCGGTTCAGTTTTGCCACCGGGAAACTACTTATCCCAGTATCAGCACTACCACCACCAACAACAACAACAGCATCTTGTCAACACATTGTCCTCTTTGGGTTTTCCTTACAATGATTCTTCATCTCCAAAGAACGCTGTTTTTACTCAAGAGAGACGGCTTTGCAGTAATCACGGGACGAATGCGTTTCTGAGGGACCATGGGCTTCTTCAAGATGTTGTTCCTTCACACATGTTGAAAGAAGAGTAG

Predicted protein sequences of Glyma02g01420

Limit To All Plant Sequences

>Glyma02g01420.1   sequence type=predicted peptide   gene model=Glyma02g01420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKKEMAVKTEDAIGSSSFPCYNSNLYPFSNAFDFSEVDKSSLGFMELLGVQDYSPLPELPQLSTVSVQPHHSTVKVPSDNGKECSEVLNHQPATPNSSSISSASSDAVNDEQNKTLLDQAEEDDDEEEGQQKTKKQLKPKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSVSCNVKKRVERSFTDPSVVVTTYEGQHTHPSPVMPRSGVSAGYANNFGSVLPPGNYLSQYQHYHHQQQQQHLVNTLSSLGFPYNDSSSPKNAVFTQERRLCSNHGTNAFLRDHGLLQDVVPSHMLKEE*

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