Report for Sequence Feature Glyma02g01410
Feature Type: gene_model
Chromosome: Gm02
Start: 1016184
stop: 1019537
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g01410
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G02380 AT
Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01960.1); Has 66 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:477814-478850 FORWARD LENGTH=231
SoyBase E_val: 5.00E-22 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_I1JBE6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JBE6_SOYBN
SoyBase E_val: 8.00E-175 ISS
UniRef100_Q9FZ23 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: T6A9.7 protein n=1 Tax=Arabidopsis thaliana RepID=Q9FZ23_ARATH
SoyBase E_val: 2.00E-19 ISS
Expression Patterns of Glyma02g01410
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma02g01410
Paralog Evidence Comments
Glyma10g01430 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma02g01410 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.02g010700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g01410
Coding sequences of Glyma02g01410
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g01410.1 sequence type=CDS gene model=Glyma02g01410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGCCATTCTATTCCAAGAGAGAAAGACGTTGAATTTGACCTTGAAAGTGGTGGGAACTCTAGCGAAGACGATGTAGGGAACGATCTTTATGTTAGTGATAGAGAATCAAAGGGTGCTTTTGGTTTGGCGTGGAATGGGATTCTGAATGTTGATGGATCAGATAAGGGTAAAAGTGGGATTGAGTCATGTAGCAATTCAGCAAAATCTGGTGATTTTGGGGTTATGGATGAAAATAATTTAGAATTGTTTGTGGACAAGGGTTTTGTCCAACATCAATTGTCCCATGTAAATGTTAATCATGCAAAACAGAAGACTAAGCCCTTTATCCCCAAAAAGCCCCCAAAGCCACCCCTTCCTCCCAGAGGCCCATCACTGGATGCTGTTGATCAGAAGTTTGTGAAGGAACTTGAGGAGCTTGCCTTGCGGAAGCGTGCGAGGGTTAAGAAAATGAAAGCGGTGAGAAAGATGAAAGCTAGCAAGTCATCGTCATCATCAACATATACAAGTCTTTCTGCCATGGTCATCACTGTTTTCTTCTTCCTTGTCATAATACTTCACGGAATCAAATCTGCAAATAGTGCCGCTGTTGGGTTAATGGCTTCCCCTGAGGCAGCAATTGCAGGAGATGAGGGTCTGATTTCGATTCAGTATCCCATGAACTTCAACAGAAATGAAGGAGATGCACCTGGCTCTCACTATCCATTTCGGCAGGAAAGATGA
Predicted protein sequences of Glyma02g01410
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g01410.1 sequence type=predicted peptide gene model=Glyma02g01410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGHSIPREKDVEFDLESGGNSSEDDVGNDLYVSDRESKGAFGLAWNGILNVDGSDKGKSGIESCSNSAKSGDFGVMDENNLELFVDKGFVQHQLSHVNVNHAKQKTKPFIPKKPPKPPLPPRGPSLDAVDQKFVKELEELALRKRARVKKMKAVRKMKASKSSSSSTYTSLSAMVITVFFFLVIILHGIKSANSAAVGLMASPEAAIAGDEGLISIQYPMNFNRNEGDAPGSHYPFRQER*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
