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Report for Sequence Feature Glyma02g01400

Feature Type:gene_model
Chromosome:Gm02
Start:1006946
stop:1009800
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G01950AT Annotation by Michelle Graham. TAIR10: glycerol-3-phosphate acyltransferase 3 | chr4:844597-846710 REVERSE LENGTH=520 SoyBaseE_val: 0ISS
GO:0006655GO-bp Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process SoyBaseN/AISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0016746GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups SoyBaseN/AISS
PTHR15486Panther ANCIENT UBIQUITOUS PROTEIN JGI ISS
PF01553PFAM Acyltransferase JGI ISS
UniRef100_B9RNA7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Glycerol-3-phosphate acyltransferase, putative n=1 Tax=Ricinus communis RepID=B9RNA7_RICCO SoyBaseE_val: 0ISS
UniRef100_I1JBE5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JBE5_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma10g01420 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g010600 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma02g01400.1   sequence type=CDS   gene model=Glyma02g01400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAAATTGTTCAGAGCGTTTTTCTTCAAGTCTCTTTTCTTCTTTTGGTACCGTTTTCTCTTTAGGCAACTCAGGAACCTCGTCCGTTTCCACAGAACCATTAGCAATTCTTTTTCGGGTGCAACAACACAGTTTAACAAATACCTGAAATTCCCCTCTCTAATCCACCGATCAGACCTCAACGATCACACGTTGATCTTTGATGTCGAAAACGCGTTGTTGAAATCCTCTTCTTTGTTCCCATATTTCATGCTCGTGGCCTTTGAGGCAGGGGGGCTTATAAGAGCCATAGTTTTGGTTCTTCTATACCCTTTTGTTTGTGTGCTGGGAAAAGAGATGGGCTTGAAGATAATGGTCATGGCATGCTTCTTTGGGATCAAAGCTTCGAGCTTCAGAGTTGGAAGGTCCGTTCTGCCGAAATTCTTCTTGGAGGACGTTGGTGCAGAAATGTTTGAGGCTCTCAAAAAAGGAGGGAAGACAGTGGGAGTCACCAATCTACCCCATGTGATGGTGGAAAGCTTCTTGAGAGAGTATTTGGACATTGATTTCGTTGTGGGCAGGGAGCTGAAAGTTTTCTGTGGATACTACGTAGGATTGATGGATGACACAAAAACTATGCATGCCTTGGAGCTGGTTAAAGAAGGAAAAGGATGCTCCGACATGATCGGAATCACAAGGTTTCGCAACATACGCGACCATGATGATTTTTTCTCTCATTGCAAGGAAGTGTACGTGGTGTCAGAAGCAGACAAGAGGAGCTGGCAAAAGCTAGCAAGGGAGAGATACCCCAGAGCCCTTATATTTCACGATGGAAGATTGGCCCTAAGACCCACTCCAAAGGAGTCCATAGCGATGTTCATGTGGCTACCGTATGCAATAATCCTCGCTGTTATTCGCATTTCCCTCGCTCTCTCACTCCCATTTACCATCTCAACCCCCTTTTTGGTCTTTAGTGGGATACGTCTCACGACCACAGCATCATCAGCGCCCACAGGCTCCCACAACATTAAACAGAACAAGGGGAATGTCGGTAATCTCTACGTGTGTAACCACAGAACATTATTAGACCCGCTCTACATCTCATTCTCGCTACAAAACAACTTAACCGCCGTGACCTACAGTTTGAGTAGGATGTCCGAGATCCTGGCCCCAATAAAAACGGTGCGGTTAACCAGAAAGCGCGACGAGGATGCCGAAATGATGAAGAGGTTGCTGGGGCAAGGGGACCTAGTTGTGTGTCCGGAGGGGACCACATGTAGAGAACCGTATTTATTGAGGTTCAGCCCTCTTTTCTCAGAGATGTGCGATGAGATTGTACCCGTTGCAGTTGACACCCACGTTAGTATGTTCCACGGAACCACTGCTGGTGGACTTAAGTGCTTGGACCCGTTCTTCTTCCTCATGAACCCCGCTCCAGTTTACACTGTTCGGCTTCTCAACCATGTCTTCACTAATTCACAATTACTATCATCTCACACCAGTAACCTTTACCAAGAGGCTCATAATTCGAGGTTTCAAGTGGCTAATAGGGTCCAAACACAGATTGGAACCGCGTTGGCGTTTGAGTGCACTAAACTCACACGAAAGGACAAGTACTTGATGTTAGCTGGTAATGAAGGCATTGTTAATTCCAACACCAAATGCATAAGCAAGTCCAACTCTTAG

>Glyma02g01400.1   sequence type=predicted peptide   gene model=Glyma02g01400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKLFRAFFFKSLFFFWYRFLFRQLRNLVRFHRTISNSFSGATTQFNKYLKFPSLIHRSDLNDHTLIFDVENALLKSSSLFPYFMLVAFEAGGLIRAIVLVLLYPFVCVLGKEMGLKIMVMACFFGIKASSFRVGRSVLPKFFLEDVGAEMFEALKKGGKTVGVTNLPHVMVESFLREYLDIDFVVGRELKVFCGYYVGLMDDTKTMHALELVKEGKGCSDMIGITRFRNIRDHDDFFSHCKEVYVVSEADKRSWQKLARERYPRALIFHDGRLALRPTPKESIAMFMWLPYAIILAVIRISLALSLPFTISTPFLVFSGIRLTTTASSAPTGSHNIKQNKGNVGNLYVCNHRTLLDPLYISFSLQNNLTAVTYSLSRMSEILAPIKTVRLTRKRDEDAEMMKRLLGQGDLVVCPEGTTCREPYLLRFSPLFSEMCDEIVPVAVDTHVSMFHGTTAGGLKCLDPFFFLMNPAPVYTVRLLNHVFTNSQLLSSHTSNLYQEAHNSRFQVANRVQTQIGTALAFECTKLTRKDKYLMLAGNEGIVNSNTKCISKSNS*







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