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Report for Sequence Feature Glyma02g01300

Feature Type:gene_model
Chromosome:Gm02
Start:949935
stop:951681
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g01300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G47190AT Annotation by Michelle Graham. TAIR10: myb domain protein 2 | chr2:19376284-19377297 FORWARD LENGTH=273 SoyBaseE_val: 5.00E-74ISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009414GO-bp Annotation by Michelle Graham. GO Biological Process: response to water deprivation SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009723GO-bp Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009738GO-bp Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway SoyBaseN/AISS
GO:0009751GO-bp Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0010260GO-bp Annotation by Michelle Graham. GO Biological Process: organ senescence SoyBaseN/AISS
GO:0016036GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation SoyBaseN/AISS
GO:0042538GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0001046GO-mf Annotation by Michelle Graham. GO Molecular Function: core promoter sequence-specific DNA binding SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005516GO-mf Annotation by Michelle Graham. GO Molecular Function: calmodulin binding SoyBaseN/AISS
KOG0048 KOG Transcription factor, Myb superfamily JGI ISS
PTHR10641Panther MYB-RELATED JGI ISS
PF00249PFAM Myb-like DNA-binding domain JGI ISS
UniRef100_Q0PJK7UniRef Annotation by Michelle Graham. Best UniRef hit: MYB transcription factor MYB76 n=1 Tax=Glycine max RepID=Q0PJK7_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q0PJK7UniRef Annotation by Michelle Graham. Most informative UniRef hit: MYB transcription factor MYB76 n=1 Tax=Glycine max RepID=Q0PJK7_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g01300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g01300
ParalogEvidenceComments
Glyma10g01340 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g01300 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g009800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g01300
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g01300
>Glyma02g01300.1   sequence type=CDS   gene model=Glyma02g01300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGACCATGAATGTTCAGGTGATGAGAAGCTTATCAGATATGGTAATTAAAAAAGGACCATGGACTGAGGAAGAAGATTCTGTTCTGATCAACTATGTCAACGTCCACGGCGAAGGCCACTGGAACTCCCTCGCTCGCTCTTCAGGTTTAAAGCGAACGGGCAAAAGCTGCAGACTAAGATGGTTCAACTACTTGCGCCCAAATGTTCGACGTGGGAACATCACCCTTCAAGAACAGCTCTTGATTCTCGAACTCCATTCCCACTGGGGCAATCGGTGGGCCAAAATAGCAGAACAACTGCCAGGGAGAACAGACAATGAGATAAAGAACTATTGGAGGACTCGAGTGGTGAAGCAGGCTAAGCAACTCAAATGTCATGTAAACAGCAAACAGTTCAGGGACGCCTTGCGTTTCGTTTGGATGCCGCGCCTTATGGAGCAGATTCAGGCTTCTTCTTCTTCCTATGGCCTTGATCAAACCACGTTGTGCAACACTCAAACCCACAGAGACAACTCAATGGTTTCATCGTACTCATCAGAGGTTGATCTTCAGCCTCCTTCTCTTTCTGATACAAGTATAACTTCATCATCTTACAATTTAATTGGTGATGGAGGCCTGTCAACGGAAAGTGCAGAAAAGGGGTCCATATACTCTCTTTGGCAGCATTGGGACTACTCTGACATACAAGCATTTGAGCCATGCAATGGTTTTGGTGATGCAGACTTGTGGACCGATGAAAACATGTGGTTCTTGCAGCAGCATCTTGCTGATGAATTATGA
Predicted protein sequences of Glyma02g01300
>Glyma02g01300.1   sequence type=predicted peptide   gene model=Glyma02g01300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METMNVQVMRSLSDMVIKKGPWTEEEDSVLINYVNVHGEGHWNSLARSSGLKRTGKSCRLRWFNYLRPNVRRGNITLQEQLLILELHSHWGNRWAKIAEQLPGRTDNEIKNYWRTRVVKQAKQLKCHVNSKQFRDALRFVWMPRLMEQIQASSSSYGLDQTTLCNTQTHRDNSMVSSYSSEVDLQPPSLSDTSITSSSYNLIGDGGLSTESAEKGSIYSLWQHWDYSDIQAFEPCNGFGDADLWTDENMWFLQQHLADEL*






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