Glyma02g01210 - SoyBase

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Report for Sequence Feature Glyma02g01210

Feature Type:	gene_model
Chromosome:	Gm02
Start:	893406
stop:	896203
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g01210

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G62260	AT	Annotation by Michelle Graham. TAIR10: Protein phosphatase 2C family protein \| chr3:23038516-23040391 REVERSE LENGTH=384	SoyBase	E_val: 5.00E-169	ISS
GO:0006470	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0008287	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: protein serine/threonine phosphatase complex	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
KOG0698	KOG	Serine/threonine protein phosphatase	JGI		ISS
PTHR13832	Panther	PROTEIN PHOSPHATASE 2C	JGI		ISS
PTHR13832:SF147	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00481	PFAM	Protein phosphatase 2C	JGI		ISS
UniRef100_I1JBC4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JBC4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_O82469	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase-2C n=1 Tax=Mesembryanthemum crystallinum RepID=O82469_MESCR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g01210

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g01210

Paralog	Evidence	Comments
Glyma10g01270	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g01210 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g009100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g01210

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g01210

Limit To All Plant Sequences

>Glyma02g01210.1   sequence type=CDS   gene model=Glyma02g01210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAGCTGAAGCAGAGGTTGCGTGTCAACAAAACGTGGGTGTGTTGGATGTGAAGCATTTTCCAAATAAGGGAAGCGATGTTCACCAGATCGGAGACGCAGATGCTAATTCGCCTCCGTGTTTTGACCGAGTTCGTGCCACTGAGTCGGTCTCCGCCGAGTTACTCACTTCACAAGAAGATGTTAAGTCTGCAGACAGGATCTCAGATGCTGCTCTTGAATCTGCGGTTCTGCAGTCTATCCCTTGCATCCGTTCTGGTAGTTTTGCTGACATTGGGCCACGGAGATACATGGAAGATGAACATATAAGGATAGATGATTTGTCGTCTCATCTGGGATCACTATACAACTTTCCCCAACCAAGTGCCTTTTATGGGGTGTTTGATGGTCATGGAGGACCTGAAGCTGCAGCTTATATAAGGAAAAACGTGACAAAGTTCTTCTTTGAGGATGTCAATTTCCCACGGACATCAGAAGTTGATAACGTATTTTTGGAAGAGGTAGAGGATTCCCTCAGAAAGACATTTCTTTTGGCTGATTCAGCTTTGGCCGATGATTGCAGTGTGAATAGTTCATCAGGCACCACGGCCCTTACTGCTTTGATATTTGGAAAGCTTCTAATGGTGGCCAATGCTGGCGACTGCAGAGCAGTTCTCTGTCGCAAAGGAGAGGCCATTGACATGTCTCAAGATCACAGGCCTATTTATCCATCAGAGAGGAGGCGAGTTGAAGAATTGGGTGGCTACATAGAAGATGGTTATCTCAATGGGGTTTTATCAGTTACTCGAGCACTGGGGGACTGGGACATGAAGTTACCTAAGGGTGCTCCCTCACCTTTGATTGCAGAGCCGGAGTTCCGGCAAGTGGCTCTAACAGATGATGATGAATTCCTCATCATAGGATGCGACGGCATCTGGGATGTGATGTCAAGTCAGCATGCTGTTAGCCTTGTTCGCAAAGGCCTGAGGCGGCATGATGACCCAGAGAAATGTGCCAGGGACCTGGTTATGGAAGCATTACGCCTGAACACATTCGACAATCTCACGGTGATCATTGTATGTTTCTCTTCCCTTGACCACGTGGAGCCAGAGCCATCCCCTCCTCGCCAACGGAAGTTGAGATGCTGTAGCCTCTCTGCAGAGGCTCTTTGTAGCTTGAGGAGCTTGTTGGAAGGCAGTGCTAGCAACTGA

Predicted protein sequences of Glyma02g01210

Limit To All Plant Sequences

>Glyma02g01210.1   sequence type=predicted peptide   gene model=Glyma02g01210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVAEAEVACQQNVGVLDVKHFPNKGSDVHQIGDADANSPPCFDRVRATESVSAELLTSQEDVKSADRISDAALESAVLQSIPCIRSGSFADIGPRRYMEDEHIRIDDLSSHLGSLYNFPQPSAFYGVFDGHGGPEAAAYIRKNVTKFFFEDVNFPRTSEVDNVFLEEVEDSLRKTFLLADSALADDCSVNSSSGTTALTALIFGKLLMVANAGDCRAVLCRKGEAIDMSQDHRPIYPSERRRVEELGGYIEDGYLNGVLSVTRALGDWDMKLPKGAPSPLIAEPEFRQVALTDDDEFLIIGCDGIWDVMSSQHAVSLVRKGLRRHDDPEKCARDLVMEALRLNTFDNLTVIIVCFSSLDHVEPEPSPPRQRKLRCCSLSAEALCSLRSLLEGSASN*

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