Glyma02g01180 - SoyBase

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Report for Sequence Feature Glyma02g01180

Feature Type:	gene_model
Chromosome:	Gm02
Start:	882917
stop:	884447
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g01180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G15580	AT	Annotation by Michelle Graham. TAIR10: Ubiquitin-like superfamily protein \| chr3:5274075-5275000 REVERSE LENGTH=115	SoyBase	E_val: 3.00E-58	ISS
GO:0006914	GO-bp	Annotation by Michelle Graham. GO Biological Process: autophagy	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005775	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar lumen	SoyBase	N/A	ISS
GO:0008017	GO-mf	Annotation by Michelle Graham. GO Molecular Function: microtubule binding	SoyBase	N/A	ISS
GO:0019776	GO-mf	Annotation by Michelle Graham. GO Molecular Function: Atg8 ligase activity	SoyBase	N/A	ISS
GO:0019779	GO-mf	Annotation by Michelle Graham. GO Molecular Function: APG8 activating enzyme activity	SoyBase	N/A	ISS
GO:0019786	GO-mf	Annotation by Michelle Graham. GO Molecular Function: APG8-specific protease activity	SoyBase	N/A	ISS
KOG1654	KOG	Microtubule-associated anchor protein involved in autophagy and membrane trafficking	JGI		ISS
PTHR10969	Panther	MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED	JGI		ISS
PTHR10969:SF4	Panther	MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3	JGI		ISS
PF02991	PFAM	Microtubule associated protein 1A/1B, light chain 3	JGI		ISS
UniRef100_B9A7M1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GmATG8i protein n=1 Tax=Glycine max RepID=B9A7M1_SOYBN	SoyBase	E_val: 8.00E-84	ISS
UniRef100_B9A7M1	UniRef	Annotation by Michelle Graham. Best UniRef hit: GmATG8i protein n=1 Tax=Glycine max RepID=B9A7M1_SOYBN	SoyBase	E_val: 8.00E-84	ISS

Expression Patterns of Glyma02g01180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g01180

Paralog	Evidence	Comments
Glyma10g01220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g01180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g008800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g01180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g01180

Limit To All Plant Sequences

>Glyma02g01180.2   sequence type=transcript   gene model=Glyma02g01180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAATATATACTATATTTACGTTATATGAATATACTGACCTGTCATCTATATCTGAAACGTAAATAACGTTTTGTGTTTAGAATTATTGGAATTTGGAAGAAAGGGTTGAGCTGCACAACAACCTAAGAATGGGAGGAAGTTCGAGCTTCAGGGATGAGTATACCTTGGAACAAAGGCTCGGAGAATCGCGGGATATTGTGGCCAAATATCCCGATCGAGTCCCCGTAAGCCTCCTTCTTCATCCTAATCATCTTCTCCTTTTTTCTTTATATATATTTTAAAATATTTGTTTTAATAATTCTCTTTTTAATCTCGCTTTGTGGATGGATCCTTATAGCTCTCTTGATCCTTGCACTCTACTGTTTATAACGAACGATTCGATTCATGTGCCAAATATATAGAACTAGAACCACACGGTAACGGTAAACATGCTTTCCGTAACCCTAAATTGGTCATTTTATGATTCGATTCTTCTTCTTTACCTTCTGCAGGTGATTGTGGAAAGATATGCGAAATGCGATCTGCCTGAGTTGGAGAAGAAAAAATACCTTGTTCCTCGAGACTTGTCTGTTGGGCATTTCATTCATATTTTGAGTTCCAGACTTAGTCTGCCCCCTGGGAAAGCTCTCTTTGTATTTGTGAAGAATACCTTGCCTCAAACTGCTAATATGATGGACTCTGTGTATAGATCATTCAAGGATGAGGATGGATTTCTTTACATGTATTATAGCACCGAAAAAACCTTTGGTTCGTACATCATGTAAAATATTAAACTCTGTACACTATTGTATCCAACACTTTGTGAAGTGACTACTATCACGAAACCTTGTACAAATTTGTTGTATGGTTTAATGTATCACTATTTATTATATTGTGATTATCCTTTCCAATACAATGACGCGTGATTTTTAAATGATTATATTATACCATTGAAACATT

Coding sequences of Glyma02g01180

Limit To All Plant Sequences

>Glyma02g01180.1   sequence type=CDS   gene model=Glyma02g01180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGGAAGTTCGAGCTTCAGGGATGAGTATACCTTGGAACAAAGGCTCGGAGAATCGCGGGATATTGTGGCCAAATATCCCGATCGAGTCCCCGTGATTGTGGAAAGATATGCGAAATGCGATCTGCCTGAGTTGGAGAAGAAAAAATACCTTGTTCCTCGAGACTTGTCTGTTGGGCATTTCATTCATATTTTGAGTTCCAGACTTAGTCTGCCCCCTGGGAAAGCTCTCTTTGTATTTGTGAAGAATACCTTGCCTCAAACTGCTAATATGATGGACTCTGTGTATAGATCATTCAAGGATGAGGATGGATTTCTTTACATGTATTATAGCACCGAAAAAACCTTTGGTTCGTACATCATGTAA

>Glyma02g01180.2   sequence type=CDS   gene model=Glyma02g01180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTTCCGTAACCCTAAATTGGTCATTTTATGATTCGATTCTTCTTCTTTACCTTCTGCAGGTGATTGTGGAAAGATATGCGAAATGCGATCTGCCTGAGTTGGAGAAGAAAAAATACCTTGTTCCTCGAGACTTGTCTGTTGGGCATTTCATTCATATTTTGAGTTCCAGACTTAGTCTGCCCCCTGGGAAAGCTCTCTTTGTATTTGTGAAGAATACCTTGCCTCAAACTGCTAATATGATGGACTCTGTGTATAGATCATTCAAGGATGAGGATGGATTTCTTTACATGTATTATAGCACCGAAAAAACCTTTGGTTCGTACATCATGTAA

Predicted protein sequences of Glyma02g01180

Limit To All Plant Sequences

>Glyma02g01180.1   sequence type=predicted peptide   gene model=Glyma02g01180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGSSSFRDEYTLEQRLGESRDIVAKYPDRVPVIVERYAKCDLPELEKKKYLVPRDLSVGHFIHILSSRLSLPPGKALFVFVKNTLPQTANMMDSVYRSFKDEDGFLYMYYSTEKTFGSYIM*

>Glyma02g01180.2   sequence type=predicted peptide   gene model=Glyma02g01180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLSVTLNWSFYDSILLLYLLQVIVERYAKCDLPELEKKKYLVPRDLSVGHFIHILSSRLSLPPGKALFVFVKNTLPQTANMMDSVYRSFKDEDGFLYMYYSTEKTFGSYIM*

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