Glyma02g01160 - SoyBase

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Report for Sequence Feature Glyma02g01160

Feature Type:	gene_model
Chromosome:	Gm02
Start:	870929
stop:	878681
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g01160

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G47070	AT	Annotation by Michelle Graham. TAIR10: squamosa promoter binding protein-like 1 \| chr2:19337144-19340552 FORWARD LENGTH=881	SoyBase	E_val: 0	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0032880	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of protein localization	SoyBase	N/A	ISS
GO:0042744	GO-bp	Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF03110	PFAM	SBP domain	JGI		ISS
UniRef100_G7IBS5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: SQUAMOSA promoter binding protein n=1 Tax=Medicago truncatula RepID=G7IBS5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002337347	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337347 related cluster n=1 Tax=unknown RepID=UPI0002337347	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g01160

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g01160

Paralog	Evidence	Comments
Glyma10g01211	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g01160 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g008600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g01160

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g01160

Limit To All Plant Sequences

>Glyma02g01160.1   sequence type=CDS   gene model=Glyma02g01160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCTAAATTTGGAGCTGAGGCTTATCATTTTTACGGTGTGGGTGCTTCCTCGGATTTGAGGGGTGTGGGGAAGAGGTCCTCAGAGTGGGATTTGAATGATTGGAGATGGGATGGTGATCTGTTCATCGCTAGCCGGCTGAATCCGGTGCCGGCCGATGGTGTTGGAGTGGGACAGCAATTTTTCCCTATTGGGTCCGGGATCCCGGTGGCCGGAGGCCCCTCCAACAGTTCTTCCACCTCTGAGGAAGTAGATCCTAGGGATCCCAAGGCGAACAAGGAAGGGGACAAGAAAAGGAGAGTTATTGTGCTGGAGGATGATGGGTTGAATGAGGAAGGGGGTACTCTTAGTTTAAAGCTTGGTGGCCATGCTTCTGCAGTGGTGGATAGGGAAGTTGGGAGCTGGGACGGTACGAATGGGAAGAAAAGTAGAGTGTCGGGAAGTACTTCAAATCGAGCTGTTTGTCAGGTGGAGGACTGCAGTGCTGATCTGAGCAAAGCTAAGGATTATCACAGACGGCATAAAGTTTGTGAGATGCACTCCAAGGCCAGTAGGGCGCTTGTGGGAAATGCAATGCAGAGATTCTGTCAACAATGTAGTAGGTTTCACCTACTTCAAGAGTTTGATGAAGGAAAGAGAAGCTGCCGAAGACGCTTGGCAGGGCATAATAAACGAAGAAGGAAAACAAATCATGAAGCTGTTCCTAATGGAAGTTCATTAAATGATGATCAGACTAGTAGCTATCTGTTGATAAGTTTATTGAAGATACTTTCAAATATGCATTCTGACAGGTCAGATCAGACTACAGATCAGGATCTACTAACTCATATTCTGAGGAGTCTTGCTAGTCAGAATGGTGAACAAGGGGGCAAGAACATAGCTAACCTTTTGCGAGAACCAGAGAATTTGTTGAGAGAAGATGGTTCATCAAGGAAGTCAGAGATGATGTCAACTTTATTCTCCAATGGTTCTCAAGGCTCTCCATCCAATATAAGACAACATGAAACTGTATCTATGGCTAAAATGCAGCAACAAGTGATGCATGCACATGATGCTGGGGCTTCTGATCAGCAAATTACATCTTCTATAAAGCCCAGCATGTCAAACAGTCCTCCGGCCTACTCAGAAGCCAGAGACAGTACCGCTGGACAGATCAAGATGAATAATTTTGATTTGAATGACATATATATTGACTCAGATGATGGTATGGAAGATTTAGAAAGATTGCCCGTCTCTACAAATCTTGTGACTAGCTCTCTTGATTACCCATGGGCACAACAAGATTCCCATCAATCAAGTCCACCTCAAACAAGTGGAAATTCTGATTCTGCATCTGCCCAGTCTCCTTCCAGTTCCAGTGGAGAAGCTCAGAGTCGCACAGATCGAATTGTTTTTAAGCTCTTCGGTAAAGAGCCAAATGATTTTCCTCTTGTACTTAGAGCACAGATTCTTGACTGGTTATCTCACAGTCCTACTGATATGGAGAGCTACATACGGCCTGGTTGTATTGTTTTGACCATTTATCTGCGTCAGGCTGAGGCGTTGTGGGAGGAACTTTGCTATGATCTGACTTCCAGTTTGAATAGGCTGTTGGATGTCTCAGATGATACTTTTTGGAGAAATGGATGGGTTCACATCAGGGTGCAGCATCAGATGGCCTTCATTTTTAATGGTCAAGTTGTCATAGATACCTCCTTACCTTTCAGAAGTAACAATTATAGCAAGATTTTGACTGTTAGTCCAATTGCTGTACCAGCATCAAAGAGAGCTCAATTTTCTGTTAAGGGTGTCAACCTGATACGCCCTGCCACTAGGTTAATGTGTGCTTTAGAAGGGAAATATCTGGTCTGTGAAGATGATCATATGTCAATGGATCAATGCTCCAAAGAACCTGATGAACTTCAGTGCGTCCAGTTTTCATGTTCTGTCCCTGTGATGAATGGAAGAGGATTTATTGAGATTGAGGACCAGGGTTTGAGTAGCAGCTTTTTTCCTTTCATTGTTGTGGAGGAGGATGTTTGCTCAGAAATCTGTACACTTGAGCCTCTTCTAGAATTAAGTGAAACTGATCCAGATATTGAAGGGACAGGAAAAATCAAAGCCAAAAATCAAGCCATGGATTTTATTCATGAAATGGGTTGGCTTCTTCACAGAAGCCAGTTGAAATTAAGGATGGTTTCTAGTGTGGATCTCTTTCCATTGAAACGGTTCAAGTGGCTTATTGAGTTTTCCATGGATCATGATTGGTGTGCAGCAGTGAGAAAACTGTTGAACCTACTGTTTGATGGAACTGTAAATACAGGAGATCATCCTTCCTTGTATCTTGCGCTTTCAGAGATGGGTCTCCTTCACAAAGCTGTAAGGAGAAATAGCAAGCATTTAGTGGAGTTGCTTTTGAGATATGTTCCTGAGAATATTTCTGATAAACTAGGACCTGAAGAGAAGGCACTGGTTGATGGAGAGAATCAGACCTTCTTGTTTAGACCTGATGTTGATGGTACTGCTGGTTTGACACCACTCCATATAGCAGCCGGGAAAGATGGTTCTGAGGATGTACTTGATGCTTTGACTAATGATCCTTGCATGGTTGGAATTGAAGCGTGGAAAAATGCTCGTGACAGCACAGGTTCGACACCTGAGGATTATGCCCGTTTACGTGGCCATTATGCTTACATTCACTTGGTGCAGAAAAAAATTAACAAGAAACAAGGAGCAGCTCATGTGGTGGTTGAGATTCCAAGCAATATGACAGAGAACAATACAAACAAGAAGCAAAATGAGTTATCCACTATCTTTGAGATTGGAAAGCCTGAAGTAAGGCGTGGCCAAGGGCACTGTAAGCTTTGTGACAACAGAATTTCTTGCAGAACTGCAGTAGGCAGGTCTATGGTATACAGACCTGCAATGCTCTCAATGGTGGCAATAGCGGCAGTCTGTGTCTGTGTGGCCCTTCTGTTTAAAAGCTCACCTGAAGTCATATGTATGTTCCGACCCTTCAGATGGGAAAATTTGGACTTTGGAACAAGCTAA

Predicted protein sequences of Glyma02g01160

Limit To All Plant Sequences

>Glyma02g01160.1   sequence type=predicted peptide   gene model=Glyma02g01160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAKFGAEAYHFYGVGASSDLRGVGKRSSEWDLNDWRWDGDLFIASRLNPVPADGVGVGQQFFPIGSGIPVAGGPSNSSSTSEEVDPRDPKANKEGDKKRRVIVLEDDGLNEEGGTLSLKLGGHASAVVDREVGSWDGTNGKKSRVSGSTSNRAVCQVEDCSADLSKAKDYHRRHKVCEMHSKASRALVGNAMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNHEAVPNGSSLNDDQTSSYLLISLLKILSNMHSDRSDQTTDQDLLTHILRSLASQNGEQGGKNIANLLREPENLLREDGSSRKSEMMSTLFSNGSQGSPSNIRQHETVSMAKMQQQVMHAHDAGASDQQITSSIKPSMSNSPPAYSEARDSTAGQIKMNNFDLNDIYIDSDDGMEDLERLPVSTNLVTSSLDYPWAQQDSHQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPTDMESYIRPGCIVLTIYLRQAEALWEELCYDLTSSLNRLLDVSDDTFWRNGWVHIRVQHQMAFIFNGQVVIDTSLPFRSNNYSKILTVSPIAVPASKRAQFSVKGVNLIRPATRLMCALEGKYLVCEDDHMSMDQCSKEPDELQCVQFSCSVPVMNGRGFIEIEDQGLSSSFFPFIVVEEDVCSEICTLEPLLELSETDPDIEGTGKIKAKNQAMDFIHEMGWLLHRSQLKLRMVSSVDLFPLKRFKWLIEFSMDHDWCAAVRKLLNLLFDGTVNTGDHPSLYLALSEMGLLHKAVRRNSKHLVELLLRYVPENISDKLGPEEKALVDGENQTFLFRPDVDGTAGLTPLHIAAGKDGSEDVLDALTNDPCMVGIEAWKNARDSTGSTPEDYARLRGHYAYIHLVQKKINKKQGAAHVVVEIPSNMTENNTNKKQNELSTIFEIGKPEVRRGQGHCKLCDNRISCRTAVGRSMVYRPAMLSMVAIAAVCVCVALLFKSSPEVICMFRPFRWENLDFGTS*

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