Glyma02g01120 - SoyBase

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Report for Sequence Feature Glyma02g01120

Feature Type:	gene_model
Chromosome:	Gm02
Start:	838681
stop:	838929
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g01120

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G75250	AT	Annotation by Michelle Graham. TAIR10: RAD-like 6 \| chr1:28244463-28245453 REVERSE LENGTH=97	SoyBase	E_val: 4.00E-14	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR25040	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR25040:SF29	Panther	SUBFAMILY NOT NAMED	JGI		ISS
UniRef100_G7KUL4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DIV3B protein n=1 Tax=Medicago truncatula RepID=G7KUL4_MEDTR	SoyBase	E_val: 3.00E-31	ISS
UniRef100_I1JBB3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JBB3_SOYBN	SoyBase	E_val: 7.00E-52	ISS

Expression Patterns of Glyma02g01120

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g01120 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g008200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g01120

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g01120

Limit To All Plant Sequences

>Glyma02g01120.1   sequence type=CDS   gene model=Glyma02g01120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGATTTTCCCAAGGGTTTGTGGGGGTGGAGTTGGAAGGAGAACAAGTTGTTTGAGCAGGCCTTAGCCGTGGTAGATGAGAACCACCCGGAACGGTGGGAGATTGTTGCAGCCATGGTTGGAGGACAAAAGAGTGCAGGGGATGTTCAAGAGCATTATGTGTTTCTTTTGGATGATTTAATGTTCATAGAATCTGGAAAATTGGACCATAAACTTGCGGTGAAAGAAGCTCACCTTGTGTCCTAA

Predicted protein sequences of Glyma02g01120

Limit To All Plant Sequences

>Glyma02g01120.1   sequence type=predicted peptide   gene model=Glyma02g01120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDDFPKGLWGWSWKENKLFEQALAVVDENHPERWEIVAAMVGGQKSAGDVQEHYVFLLDDLMFIESGKLDHKLAVKEAHLVS*

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