Glyma02g01040 - SoyBase

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Report for Sequence Feature Glyma02g01040

Feature Type:	gene_model
Chromosome:	Gm02
Start:	783549
stop:	785170
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g01040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G01730	AT	Annotation by Michelle Graham. TAIR10: DHHC-type zinc finger family protein \| chr4:749574-752034 FORWARD LENGTH=508	SoyBase	E_val: 1.00E-96	ISS
GO:0000226	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization	SoyBase	N/A	ISS
GO:0000911	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation	SoyBase	N/A	ISS
GO:0006346	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0031048	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA	SoyBase	N/A	ISS
GO:0048451	GO-bp	Annotation by Michelle Graham. GO Biological Process: petal formation	SoyBase	N/A	ISS
GO:0048453	GO-bp	Annotation by Michelle Graham. GO Biological Process: sepal formation	SoyBase	N/A	ISS
GO:0051567	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR22883	Panther	ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN	JGI		ISS
PF01529	PFAM	DHHC zinc finger domain	JGI		ISS
UniRef100_G7IBQ1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Palmitoyltransferase ERF2 n=1 Tax=Medicago truncatula RepID=G7IBQ1_MEDTR	SoyBase	E_val: 3.00E-154	ISS
UniRef100_I1JBA5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JBA5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g01040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g01040 not represented in the dataset	Glyma02g01040 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g01040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma02g01040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g01040

Limit To All Plant Sequences

>Glyma02g01040.1   sequence type=CDS   gene model=Glyma02g01040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAGGTGAAAAAACACAGTAAGCACTGCAGGACCTGCAATCGCTGTGTTGAAGGGTTTGATCACCATTGCAGGTGGCTGAATAACTGTGTTGGGAAAAGGAACTACACAGCCTTCTTTCTTCTCATGATTTTCCTTTTGATTAAAGGAGGGACTGCAATTGCTATATTTATCAGGTGCTTTGTTGATAGGAGAGGAATAGAAAAGGAGCTTCAGAGGAAGCTTTATGTAGATTTTCCAAGAGGAGTTCTTGCCACCATATGTGTGTTTCTTCTCTTACTGACAGCTTATAGTTCAGCAGCACTGGGACAGCTGTTCTTCTTTCATGTAGTTCTCATACGAAAGACAAACACACATGCTATTAAATCAATAATAATCAGTTTGCGAAAAACCTATGACTATATTCTAGCCATGAAAGAAGAGAATGAAGCCATGGAATTGGAATCATTCGATGATTCTGATTTCTCTTCAGATGAGAGCTTTGATTTTGACTCACCTGAAAAGCCAACACTAATGTCAGGGTTTCTATGCAAAGGAAACCAGGGCAAGAAAGCCCTACTGGCAGCTGAGAAGGCCAGGGAAAGGATTATGAGAGAAAAGCCAATGGGTGAACATAATTCATTAAAACCTCTTCCATTGGAAACAAAATGCGGACCATTGATGAATACATATAAAAATATGGACACTGAAGATTTTGGCTCAACATCTTTTATAGCAAAAGGCAGACTTAACGAATCACCAGGAAGGTTTTCAAGCCCAAGAAGGAGATTTTCTGCTGGTTCACCAACGGTGTTCTCCAGCAGCATGATGGCATCTCCACATCACAAATATAGAAGCAGCTTCGACTTGAAATTAACTGGTGTGTCCAGGGAGCTCGAAACACATATTTCAAGGCAGGTTCTTTGTTCAGTGATCAGCAAAGATGATAGCGAACCATCCCCAAGA

Predicted protein sequences of Glyma02g01040

Limit To All Plant Sequences

>Glyma02g01040.1   sequence type=predicted peptide   gene model=Glyma02g01040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
QVKKHSKHCRTCNRCVEGFDHHCRWLNNCVGKRNYTAFFLLMIFLLIKGGTAIAIFIRCFVDRRGIEKELQRKLYVDFPRGVLATICVFLLLLTAYSSAALGQLFFFHVVLIRKTNTHAIKSIIISLRKTYDYILAMKEENEAMELESFDDSDFSSDESFDFDSPEKPTLMSGFLCKGNQGKKALLAAEKARERIMREKPMGEHNSLKPLPLETKCGPLMNTYKNMDTEDFGSTSFIAKGRLNESPGRFSSPRRRFSAGSPTVFSSSMMASPHHKYRSSFDLKLTGVSRELETHISRQVLCSVISKDDSEPSPR

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