Glyma02g01031 - SoyBase

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Report for Sequence Feature Glyma02g01031

Feature Type:	gene_model
Chromosome:	Gm02
Start:	777358
stop:	781690
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g01031

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G04450	AT	Annotation by Michelle Graham. TAIR10: WRKY family transcription factor \| chr4:2218379-2221113 FORWARD LENGTH=528	SoyBase	E_val: 6.00E-75	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_B9RN37	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RN37_RICCO	SoyBase	E_val: 1.00E-123	ISS
UniRef100_UPI000233797A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233797A related cluster n=1 Tax=unknown RepID=UPI000233797A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g01031

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g01031 not represented in the dataset	Glyma02g01031 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g01031 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g007500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g01031

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g01031

Limit To All Plant Sequences

>Glyma02g01031.1   sequence type=CDS   gene model=Glyma02g01031   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAACCATCACCAAATATTGCAACAACCAAACCGTGAATTTACCTTACTAAGATCCACCGATTTCCTCCGCCAGAATCTCAATCTAGATCCCCCAACCGTCAACACCGGAAAACATGTCGATCCTTCCATCAAAGAAGTGGATTTTTTCTCATCAAGTTCATCACCACCAAAGAACAGTGGCACTTATAACTCGAGTCAAGAAGAATCGCGTGATCGTCGTACAAACATGGCTAAAGACGATAGATCACCAACTCTTTTCAATGATCAGCTCGTAAACACTGCGCTAAATCTAAGTCCGGGTGCTGGGGTGTCAAGATCAGCAGCAAATGATGAAAACCTTAAAACTTTGCTGAATACACTTCAAAGGGAATCGCTTAGATTACAAGAAGAGAATTGCAAACTGAGAACTATGTTGGACCAAATCACCAAAAACAACTACCAGTTACAATTGTTCATTGCTTTGCAGAAGCAAAAGCAGTGTCAGAAGGTGGAGACAAATTCGATGATATGTGGCCAACATTTACTGGACCCACGACCATGCACCAAATTAGACGCTCAAGTTGCATCATTTCCAGATGATAAATCTGGTCAACAGGGTGATCCCGTAGAAGATGTTCTTGAACAAACGTCCTCACACAGTTGGGGGTCATCCAAGAGCCCCACCTTTGAAAAATCCAAGCCTAGTGAGCTTCCTTTCAAAAAAACCAGAGTTTCCGTGCGTGCAAAATCAGAAGCTCCTTTGATTAGTGATGGATGTCAATGGAGGAAATATGGACAAAAAATAGCCAAGGGTAATCCTTGTCCCCGTGCCTATTATCGTTGCACTATGGCCGTAGGATGCCCAGTTCGTAAGCAGGTGCAACGATGCATGGAGGACAAGACGGTGTTGATAACAACCTATGAAGGCAATCATAACCATCCTCTTCCACCCTCAGCCACAGTCATGGCCAATTCTACCTCAGCAGCTGCAGCTATGCTCTTATCTTCTTCATGTTCAATATCTAATACCGAAGCACTAAGTAACACTGTAGGAGTATTCTCTTCCATGCCCTACATCCCAATGGCAACCCTCTCAACATCTGCACCATTTCCTACTATCACCCTTGACATGACCACCAACCCTATGCAACTGCATCGGGAAACTTCCTCTGCCCTAACATCCCTTCTTCCATTGCATGCAACTTCTATTCCCCAGCTACTAGGACACCCTGTCATCTTCCCCCACAAGATGCCACATCCACTAGGCCAACAACAACAACCTTTGTTTTTGAATGAGACGATGAGTGCAGCTATTGCTTCGAATCCGAATTTCACTATAGCATTAGCAGCAGCTATCTCATCAATTATTGGAGCTCCTAGAGGCACTGATGGAAACAACAACAATAGTAGCAATGGCGGAAGTCATGTTCTTCCTCTTAATGGGGCATCTATGTTGCCTGGATCCACTTAG

Predicted protein sequences of Glyma02g01031

Limit To All Plant Sequences

>Glyma02g01031.1   sequence type=predicted peptide   gene model=Glyma02g01031   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENHHQILQQPNREFTLLRSTDFLRQNLNLDPPTVNTGKHVDPSIKEVDFFSSSSSPPKNSGTYNSSQEESRDRRTNMAKDDRSPTLFNDQLVNTALNLSPGAGVSRSAANDENLKTLLNTLQRESLRLQEENCKLRTMLDQITKNNYQLQLFIALQKQKQCQKVETNSMICGQHLLDPRPCTKLDAQVASFPDDKSGQQGDPVEDVLEQTSSHSWGSSKSPTFEKSKPSELPFKKTRVSVRAKSEAPLISDGCQWRKYGQKIAKGNPCPRAYYRCTMAVGCPVRKQVQRCMEDKTVLITTYEGNHNHPLPPSATVMANSTSAAAAMLLSSSCSISNTEALSNTVGVFSSMPYIPMATLSTSAPFPTITLDMTTNPMQLHRETSSALTSLLPLHATSIPQLLGHPVIFPHKMPHPLGQQQQPLFLNETMSAAIASNPNFTIALAAAISSIIGAPRGTDGNNNNSSNGGSHVLPLNGASMLPGST*

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