Report for Sequence Feature Glyma02g00970
Feature Type: gene_model
Chromosome: Gm02
Start: 739945
stop: 742628
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g00970
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G57430 AT
Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:21255731-21258403 REVERSE LENGTH=890
SoyBase E_val: 1.00E-147 ISS
GO:0031425 GO-bp
Annotation by Michelle Graham. GO Biological Process: chloroplast RNA processing
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
PTHR24015 Panther
FAMILY NOT NAMED
JGI ISS
PF01535 PFAM
PPR repeat
JGI ISS
UniRef100_F5CAE0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat protein 78 (Fragment) n=1 Tax=Funaria hygrometrica RepID=F5CAE0_FUNHY
SoyBase E_val: 4.00E-153 ISS
UniRef100_I1JB98 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1JB98_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma02g00970
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma02g00970 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.02g006900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g00970
Coding sequences of Glyma02g00970
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g00970.2 sequence type=CDS gene model=Glyma02g00970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTGAAAGCTTCCTTGTCTGGGCGCGTGTTGCTAAGAAGATTAACAACATTGACATGGTCGTGTCCATGTAGAGCGAGCATGCTGTTTGGAACTAAAGTCAATGCTCACGCCATTGCTATGCTTATAACATTCACACGCCAACAACACTCACTTCCCATTCACTTCACCGTTACCTCCTTCCACCGCCTCAAGTCTCCACCCAATCTTCACGAAGCCAGAACGTTGCACGCTCTTCTTCTCGTTTTGGGTTTCTTTCAACCCACGTGTCCTCATTCATCATCCTTTGCTTCCCAACTTGTCAATGTCTATGTCAACTTTGGTTCCCTCCAACACGCGTTTCTCACCTTCCGTGCACTGCCTCACAAACCCATCATTGCTTGGAACGCCATACTCAGAGGTCTGGTTGCTGTTGGCCACTTCACCAAAGCCATTCACTTTTATCACTCCATGCTCCAACATGGTGTGACACCTGATAACTACACATACCCTCTTGTCCTCAAGGCTTGTTCTTCCTTGCATGCACTGCAATTAGGAAGATGGGTTCATGAGACCATGCACGGTAAAACAAAGGCTAATGTTTACGTTCAGTGTGCTGTGATTGACATGTTTGCTAAGTGTGGAAGCGTTGAGGATGCACGTAGGATGTTTGAGGAAATGCCGGATAGAGACTTGGCCTCGTGGACTGCCTTGATATGTGGGACCATGTGGAATGGTGAGTGTCTTGAAGCACTTTTGCTATTCAGAAAGATGAGATCGGAAGGTCTGATGCCTGATTCGGTGATTGTGGCGTCTATCTTACCGGCATGTGGAAGATTGGAGGCTGTGAAATTGGGGATGGCGTTGCAGGTCTGTGCCGTGAGGAGTGGCTTTGAGAGTGATTTGTATGTCTCCAATGCTGTGATAGACATGTACTGTAAATGCGGTGACCCACTTGAGGCCCATCGCGTGTTTAGTCACATGGTTTATAGCGATGTAGTTTCTTGGAGTACCTTGATTGCTGGCTACTCACAAAACTGCCTATACCAAGAGAGTTATAAACTGTATATTGGAATGATAAATGTGGGTTTAGCAACAAATGCGATTGTTGCCACGAGCGTTCTTCCTGCTTTGGGAAAACTCGAGTTGTTGAAACAAGGGAAGGAGATGCACAACTTTGTTCTTAAAGAAGGACTCATGTCTGATGTTGTTGTAGGAAGTGCATTGATTGTTATGTATGCTAATTGTGGGTCTATCAAGGAAGCAGAGTCAATATTTGAGTGCACGTCAGATAAGGATATCATGGTGTGGAATTCAATGATAGTAGGGTATAATTTAGTTGGTGACTTTGAGTCAGCATTCTTTACTTTCAGAAGAATTTGGGGAGCTGAACATAGGCCAAATTTCATTACTGTAGTAAGTATCCTTCCTATATGCACCCAAATGGGAGCTCTTAGACAGGGAAAGGAAATCCATGGTTATGTGACCAAGAGCGGTCTAGGATTAAATGTTTCTGTGGGAAACTCTCTAATAGACATGTACAGCAAATGCGGATTTCTAGAACTCGGAGAGAAGGTCTTTAAACAGATGATGGTAAGGAATGTCACAACATATAACACTATGATCTCGGCCTGTGGATCTCATGGCCAGGGTGAAAAAGGTTTGGCATTTTATGAGCAAATGAAGGAGGAAGGAAATAGACCAAACAAAGTCACTTTTATTTCACTGTTATCTGCATGTAGTCATGCAGGTCTCCTTGATAGAGGGTGGTTGTTGTATAATTCAATGATTAATGATTATGGAATTGAGCCAAATATGGAACACTACTCGTGCATGGTGGATCTCATTGGTAGAGCAGGAGATCTTGATGGTGCATACAAGTTCATCACAAGGATGCCTATGACACCAGATGCCAATGTCTTTGGGAGCTTACTAGGTGCTTGTCGACTTCACAACAAAGTGGAACTGACTGAGCTTCTTGCAGAGCGTATTTTACAATTGAAAGCTGATGATTCAGGCCACTATGTTCTTTTGTCAAATTTATATGCCTCTGGGAAAAGATGGGAAGACATGTCAAAGGTGAGAAGCATGATAAAAGATAAAGGGTTGGAGAAAAAACCAGGAAGTAGCTGGATTCAGGTGGGTCACTGCATTTATGTTTTCCATGCTACCAGTGCCTTTCATCCTGCGTTTGCAAAGATTGAGGAGACTCTGAATAGCTTATTGTTAGTGATGAAAAGTGAAGACTATATGTTAACCAACGTTAATGATAAACTTTTAACGTGA
Predicted protein sequences of Glyma02g00970
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g00970.2 sequence type=predicted peptide gene model=Glyma02g00970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLKASLSGRVLLRRLTTLTWSCPCRASMLFGTKVNAHAIAMLITFTRQQHSLPIHFTVTSFHRLKSPPNLHEARTLHALLLVLGFFQPTCPHSSSFASQLVNVYVNFGSLQHAFLTFRALPHKPIIAWNAILRGLVAVGHFTKAIHFYHSMLQHGVTPDNYTYPLVLKACSSLHALQLGRWVHETMHGKTKANVYVQCAVIDMFAKCGSVEDARRMFEEMPDRDLASWTALICGTMWNGECLEALLLFRKMRSEGLMPDSVIVASILPACGRLEAVKLGMALQVCAVRSGFESDLYVSNAVIDMYCKCGDPLEAHRVFSHMVYSDVVSWSTLIAGYSQNCLYQESYKLYIGMINVGLATNAIVATSVLPALGKLELLKQGKEMHNFVLKEGLMSDVVVGSALIVMYANCGSIKEAESIFECTSDKDIMVWNSMIVGYNLVGDFESAFFTFRRIWGAEHRPNFITVVSILPICTQMGALRQGKEIHGYVTKSGLGLNVSVGNSLIDMYSKCGFLELGEKVFKQMMVRNVTTYNTMISACGSHGQGEKGLAFYEQMKEEGNRPNKVTFISLLSACSHAGLLDRGWLLYNSMINDYGIEPNMEHYSCMVDLIGRAGDLDGAYKFITRMPMTPDANVFGSLLGACRLHNKVELTELLAERILQLKADDSGHYVLLSNLYASGKRWEDMSKVRSMIKDKGLEKKPGSSWIQVGHCIYVFHATSAFHPAFAKIEETLNSLLLVMKSEDYMLTNVNDKLLT*