SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G01660 | AT | Annotation by Michelle Graham. TAIR10: ABC transporter 1 | chr4:708652-711095 FORWARD LENGTH=623 | SoyBase | E_val: 0 | ISS |
| GO:0015996 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chlorophyll catabolic process | SoyBase | N/A | ISS |
| GO:0017004 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytochrome complex assembly | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005746 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial respiratory chain | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| KOG1234 | KOG | ABC (ATP binding cassette) 1 protein | JGI | ISS | |
| PTHR10566 | Panther | CHAPERONE-ACTIVITY OF BC1 COMPLEX (CABC1)-RELATED | JGI | ISS | |
| PTHR10566:SF22 | Panther | ABC1 - RELATED | JGI | ISS | |
| PF03109 | PFAM | ABC1 family | JGI | ISS | |
| UniRef100_B9RN20 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ubiquinone biosynthesis protein coq-8, putative n=1 Tax=Ricinus communis RepID=B9RN20_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002337972 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337972 related cluster n=1 Tax=unknown RepID=UPI0002337972 | SoyBase | E_val: 0 | ISS |
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Glyma02g00920 not represented in the dataset |
Glyma02g00920 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g006500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g00920.2 sequence type=CDS gene model=Glyma02g00920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCTCCTTCAGGGACCTCACAAGGCTCTTGAACGGCCTCTCCCTAATCGCCAACGAATTCGCGAAACGCTCTTTGCCTGCCACAACCTCTGATTTCGAAACCCTAATCAAGAAAACTCTCGTCTCCGCCACCGACCTCTCCGGCATCACCAGGGGAAAGGTTCGCCACTTCCCCGATACTCCTCCCTCCTCTAACACCACACAACACGACCACGCTGCTGCGTCTAGTTCCGTTGTTTTTTTCGCCGACGACAATCCTTCTTCTCAATCTCATTCCACTCCGGCAACAACAACTGTAACAAACATTGATGATGTTGCCTATTCTTCTTCCGACGCAAATCACCGGCAAGCTTCCGATGCAAATGTTTGTGCTGCGGAGGAGGAGAAAAGTGAGGTTGTGACCTCTGCTGAAACGGTTAATCAAGGTGCGAGTAGGGAATTGGCACCGGCACCGGAACCTCCGCCGTCGCCGTTGAGGAAACGAAGGCCGAGGGAGAGGAAGGTTCCTGCAACTCCTTTTTCTAGGGCTCTTGGGTTTGCTGGGCTAGGAGCAGGTCTTGCGTGGGGGACACTTCAGGAATCTGCCAAGAGGCTTGCCTTTGGTACGCCTACTACGCAAGGCAATCAATCTGCGCTTTCACCGTTTTTGTCCGAAAAAAATGCCGAACGTTTGGCTCTTGCACTATGTAGAATGCGTGGAGCAGCACTTAAAATTGGGCAGATGTTGAGCATACAAGATGAATCTCTTGTTCCTGCTCCGATCCTGGCTGCATTAGAAATTGTTCGTCAAGGTGCAGATGTGATGCCAAAGAGCCAGCTTAATCAAGTTTTAAATGCTGAATTAGGTCCTGGCTGGTCATCAAAATTAATTAGTTTTGATTATGAACCTATAGCTGCTGCAAGTATTGGCCAGGTGCACAAAGCTGTCATGAAGGATGGCATGCAAGTTGCAATGAAAATTCAGTACCCTGGTGTGGGAGATAGCATCAATAGTGACATTGAGAATGTGAAGCTTCTTTTAAACTACACAAATTTAATTCCTAAAGGACTTTATCTTGACAGAGCTATAAAGGTGGCCAAAGAAGAATTATCTCGCGAGTGTGATTACAAGTTGGAGGCAGCAAATCAGAAGCGGTTCCGAGATCTTCTTACTGGCACAGACGGATTTTATGTTCCAATAGTTGTGGATAATATTTCAAGCAAAAGAGTATTAACTACTGAGCTTGTTCGTGGAATTACAATTGACAAAGTGGCTTTACTGGACCAGGAAACTCGTAATTATATCGGGAAAAAGTTATTAGAGCTCACGTTGATGGAGTTATTTGTATTCCGGTTTATGCAGACTGATCCTAATTGGGGTAATTTCTTATTTGATGAAGTTACAAAGACAATCAATCTGATTGATTTTGGAGCAGCACGGGATTACCCTAAAAGATTTGTTGATGATTATTTAAGAATGGTTCTAGCATGTGCAAATGGTGATAGTGATGGGGTCATTGAGATGTCCAGAAGACTGGGGTTCCTCACTGGAATGGAATCAGATGTGATGCTAGATGCCCACGTCCAAGCTGGGTTTATTGTGGGCTTGCCATTCTCAAGACCTGGTGGATTTGATTTCCAATCAACCAACATTACTCAAAGCATTTCTCATCTTGGGGCAACAATGCTCAAGCACAGGCTCACTCCTCCACCTGATGAAGCCTATAGTCTACACAGAAAGCTTTCCGGTGCTTTTTTGGCATGCATTAAGATTGGGGCCGTTGTCCCATGTAGGGAACTGCTGCTTGAAGTATACAAGCATCATAAGTTTGGTGAAGAAAATGAGATATTATCCACTGGTTCAGTGTCTGCATAG
>Glyma02g00920.2 sequence type=predicted peptide gene model=Glyma02g00920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASFRDLTRLLNGLSLIANEFAKRSLPATTSDFETLIKKTLVSATDLSGITRGKVRHFPDTPPSSNTTQHDHAAASSSVVFFADDNPSSQSHSTPATTTVTNIDDVAYSSSDANHRQASDANVCAAEEEKSEVVTSAETVNQGASRELAPAPEPPPSPLRKRRPRERKVPATPFSRALGFAGLGAGLAWGTLQESAKRLAFGTPTTQGNQSALSPFLSEKNAERLALALCRMRGAALKIGQMLSIQDESLVPAPILAALEIVRQGADVMPKSQLNQVLNAELGPGWSSKLISFDYEPIAAASIGQVHKAVMKDGMQVAMKIQYPGVGDSINSDIENVKLLLNYTNLIPKGLYLDRAIKVAKEELSRECDYKLEAANQKRFRDLLTGTDGFYVPIVVDNISSKRVLTTELVRGITIDKVALLDQETRNYIGKKLLELTLMELFVFRFMQTDPNWGNFLFDEVTKTINLIDFGAARDYPKRFVDDYLRMVLACANGDSDGVIEMSRRLGFLTGMESDVMLDAHVQAGFIVGLPFSRPGGFDFQSTNITQSISHLGATMLKHRLTPPPDEAYSLHRKLSGAFLACIKIGAVVPCRELLLEVYKHHKFGEENEILSTGSVSA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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