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Report for Sequence Feature Glyma02g00890

Feature Type:gene_model
Chromosome:Gm02
Start:687882
stop:688388
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g00890
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G23230AT Annotation by Michelle Graham. TAIR10: Integrase-type DNA-binding superfamily protein | chr3:8289647-8290066 REVERSE LENGTH=139 SoyBaseE_val: 5.00E-37ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009873GO-bp Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PF00847PFAM AP2 domain JGI ISS
UniRef100_B9HU98UniRef Annotation by Michelle Graham. Most informative UniRef hit: AP2/ERF domain-containing transcription factor n=1 Tax=Populus trichocarpa RepID=B9HU98_POPTR SoyBaseE_val: 3.00E-40ISS
UniRef100_UPI0002337971UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002337971 related cluster n=1 Tax=unknown RepID=UPI0002337971 SoyBaseE_val: 1.00E-75ISS

Expression Patterns of Glyma02g00890
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g00890 not represented in the dataset
Glyma02g00890 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g00890 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g006300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g00890
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g00890
>Glyma02g00890.1   sequence type=CDS   gene model=Glyma02g00890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGAAGAGGGTGGTTCAAGAGTAAAAGCCAATAAGGATGAAGATCAAGAGCATGTTAAGTACAGAGGGGTACGTAGGAGGCCATGGGGAAAATTTGCAGCAGAGATTCGTGACTCAATGAGACAAGGTCAAAGGTTGTGGCTTGGAACATTCAACACTGCAGAGGAAGCAGCTAGAGCCTATGATAGAGCTGCGTATGCCATGAGAGGTCCCTTTGCAGTCCTCAATTTCCCTAATGAATACCCCCCTTTAGCAATTGGTGCTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCAATGCTTCTTCGGCTTCGGCTTTGGCTTCACCCTCTTCAAGTCATGTGGAAGGAAGTGGAAGGAGTGAGCAAGCAAACCAAGTGATTGAGTTTGAGTACTTTGATGACAAGTTGTTGGAGGAGCTTCTTGGTTACGAAGACAAAAATAAACCTGACAAGTGA
Predicted protein sequences of Glyma02g00890
>Glyma02g00890.1   sequence type=predicted peptide   gene model=Glyma02g00890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDEEGGSRVKANKDEDQEHVKYRGVRRRPWGKFAAEIRDSMRQGQRLWLGTFNTAEEAARAYDRAAYAMRGPFAVLNFPNEYPPLAIGASSSSSSSSSSSSSSSSSSSSSSSSSSNASSASALASPSSSHVEGSGRSEQANQVIEFEYFDDKLLEELLGYEDKNKPDK*






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