Glyma02g00890 - SoyBase

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Report for Sequence Feature Glyma02g00890

Feature Type:	gene_model
Chromosome:	Gm02
Start:	687882
stop:	688388
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g00890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G23230	AT	Annotation by Michelle Graham. TAIR10: Integrase-type DNA-binding superfamily protein \| chr3:8289647-8290066 REVERSE LENGTH=139	SoyBase	E_val: 5.00E-37	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009873	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF00847	PFAM	AP2 domain	JGI		ISS
UniRef100_B9HU98	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AP2/ERF domain-containing transcription factor n=1 Tax=Populus trichocarpa RepID=B9HU98_POPTR	SoyBase	E_val: 3.00E-40	ISS
UniRef100_UPI0002337971	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337971 related cluster n=1 Tax=unknown RepID=UPI0002337971	SoyBase	E_val: 1.00E-75	ISS

Expression Patterns of Glyma02g00890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g00890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g006300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g00890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g00890

Limit To All Plant Sequences

>Glyma02g00890.1   sequence type=CDS   gene model=Glyma02g00890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGAAGAGGGTGGTTCAAGAGTAAAAGCCAATAAGGATGAAGATCAAGAGCATGTTAAGTACAGAGGGGTACGTAGGAGGCCATGGGGAAAATTTGCAGCAGAGATTCGTGACTCAATGAGACAAGGTCAAAGGTTGTGGCTTGGAACATTCAACACTGCAGAGGAAGCAGCTAGAGCCTATGATAGAGCTGCGTATGCCATGAGAGGTCCCTTTGCAGTCCTCAATTTCCCTAATGAATACCCCCCTTTAGCAATTGGTGCTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCAATGCTTCTTCGGCTTCGGCTTTGGCTTCACCCTCTTCAAGTCATGTGGAAGGAAGTGGAAGGAGTGAGCAAGCAAACCAAGTGATTGAGTTTGAGTACTTTGATGACAAGTTGTTGGAGGAGCTTCTTGGTTACGAAGACAAAAATAAACCTGACAAGTGA

Predicted protein sequences of Glyma02g00890

Limit To All Plant Sequences

>Glyma02g00890.1   sequence type=predicted peptide   gene model=Glyma02g00890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDEEGGSRVKANKDEDQEHVKYRGVRRRPWGKFAAEIRDSMRQGQRLWLGTFNTAEEAARAYDRAAYAMRGPFAVLNFPNEYPPLAIGASSSSSSSSSSSSSSSSSSSSSSSSSSNASSASALASPSSSHVEGSGRSEQANQVIEFEYFDDKLLEELLGYEDKNKPDK*

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