Glyma02g00840 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma02g00840

Feature Type:	gene_model
Chromosome:	Gm02
Start:	634487
stop:	639224
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g00840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G54700	AT	Annotation by Michelle Graham. TAIR10: phosphate transporter 1;7 \| chr3:20248463-20250070 REVERSE LENGTH=535	SoyBase	E_val: 0	ISS
GO:1901684	GO-bp	Annotation by Michelle Graham. GO Biological Process: arsenate ion transmembrane transport	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005351	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sugar:hydrogen symporter activity	SoyBase	N/A	ISS
GO:0015114	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphate ion transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015144	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate transmembrane transporter activity	SoyBase	N/A	ISS
GO:1901683	GO-mf	Annotation by Michelle Graham. GO Molecular Function: arsenate ion transmembrane transporter activity	SoyBase	N/A	ISS
KOG0252	KOG	Inorganic phosphate transporter	JGI		ISS
PTHR24064	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24064:SF16	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00083	PFAM	Sugar (and other) transporter	JGI		ISS
UniRef100_C3UZD5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phosphate transporter 1 n=1 Tax=Glycine max RepID=C3UZD5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_C3UZD5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Phosphate transporter 1 n=1 Tax=Glycine max RepID=C3UZD5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g00840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g00840

Paralog	Evidence	Comments
Glyma10g00950	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g00840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g005800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g00840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g00840

Limit To All Plant Sequences

>Glyma02g00840.3   sequence type=transcript   gene model=Glyma02g00840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGTTTGTGAAGCGTTGACAAGATAGGATGTGAATGCTCAAGATTGAGCATATACTGTAGACGCTGAGTATATTCTTTTGACTCTGAAGCAATACATTCTTGGGATGGGTGCTATACTATGTTATATATATGTCTGTAGCTGCACACGATGCCAACCATACTTCCCAACACTAACACTTGTTCAATTACTCCTTCAAATCAGTCTGGCTTGACAAGCAGGAAAGGTATTTATTGCTCTCTACTTAGGTAACATAAGCCAACAATTTTAGTAGTAATTAATGGCTGGAGAATTGGGAGTTTTGAATGCACTTGATGTGGCAAAGACACAATGGTACCACTTCACTGCTATTGTGATCGCTGGAATGGGTTTCTTCACCGATGCCTATGACCTCTTCTGCATTTCCCTAGTCACCAAGCTTCTAGGGAGGCTATATTACACAGAACCAGGTGCACCAAAGCCAGGTTCACTTCCTCCAAGAGTTCAAGCTTCTGTGACTGGTGTAGCACTATGTGGCACATTAGCCGGCCAACTATTCTTTGGTTGGCTTGGTGACAAAATGGGGAGAAAAAGAGTCTATGGACTAACACTCATTCTCATGGTAGTGTGCTCCCTTGCCTCAGGACTCTCCTTTGGGTCAACTCCAGAGGGTGTCATGGCCTCACTTTGCTTCTTCAGGTTCTGGCTAGGGTTTGGGATTGGTGGTGACTACCCTCTTTCTGCCACAATCATGTCTGAATATGCCAACAAGAAGACGCGTGGCGCGTTCATAGCCGCGGTGTTTGCAATGCAAGGATTCGGAATCCTGGCTGGTGGAGTGGTGGCATTGATTGTTTCATATGCATATGACCAAAAGTACAAGCTTCCTAGTTATGAACAGAATCCAGAAGCATCCTTGGACCCCGCATTTGACTATGTTTGGAGAATAGTTTTGATGTTTGGTGCAGTTCCTGCTGCACTCACCTACTACTGGCGCATGAAGATGCCAGAGACAGCACGTTACACTGCCCTTGTGGCCAAGAATGCAAAACAAGCTGCTGCAGACATGTCTAAGGTGTTGCAAGTGGAACTTGAAGCTGAAGAGGAGAAGGTGAAGAAATTGACAGAGAATGAGAGCAACAAGTATGGTTTGTTCACCAAGGAATTTGTGAAACGCCATGGCCTGCATTTGTTGGGAACCACCACCACTTGGTTCTTGTTGGACATAGCATTCTACAGCCAAAACCTTTTCCAGAAGGACATTTTCAGTGCAATTGGGTGGATCCCTCCAGCAAAGGAAATGAATGCAATCCACGAGGTGTATAAGATTGCAAGAGCACAAACACTCATAGCACTATGCAGTACTGTGCCAGGTTACTGGTTCACAGTGGCATTAATTGATTACATGGGCCGTTTTGCCATCCAATTGTTGGGGTTCTTCTTCATGACTGTGTTCATGTTTGCTTTGGCTATACCATATGATCATTGGTCTGAGAAAGAAAACAGAATTGGGTTTGTGGTGATGTACTCTTTCACCTTTTTCTTTGCCAATTTTGGTCCAAATTCCACCACATTTGTTGTGCCAGCAGAGATTTTCCCTGCAAGGCTAAGGTCCACTTGCCATGGAATCTCTGCTGCTGCAGGAAAGGCTGGTGCAATTGTGGGTGCATTTGGGTTCCTATATGCTGCACAAAGCAAGGACCCTTCCAAGACTGATGCAGGGTACCCTACTGGTATTGGAATTAAGAACTCACTCATTATGCTTGGTGTGATCAACTTCATTGGGATGTTGTTCACCTTGCTTGTTCCAGAATCAAAGGGAAAATCACTGGAGGAGTTGAGTGGGGAGAATGGTGAAAATGATGCTGAACATGCAGTGTCTGCTAGGACAGTTCCTGTTTGATTGAAGTTAAGTTTGTGTTCAACAATGTGGTTCAACTTCAAATTGTGATATGTGTACATTTTAATACTGGGTTTTGGTTGTGACGTGTTTACACCAATGATGTAGTAGTTGCACGGTTCAGGGTGCTAGAGCTTAAAAATAATTACAGTTTGTTTGCTTTTGGTTCTTACTTTTGTTTTTTTTTTTGTTTAAAATAGATACCTGGTAATTTTACTTTTGATTATTTGTAAAGTTTTATTGTTTTGTTATTTAATCACAATTTATGATTAA

Coding sequences of Glyma02g00840

Limit To All Plant Sequences

>Glyma02g00840.2   sequence type=CDS   gene model=Glyma02g00840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGAGAATTGGGAGTTTTGAATGCACTTGATGTGGCAAAGACACAATGGTACCACTTCACTGCTATTGTGATCGCTGGAATGGGTTTCTTCACCGATGCCTATGACCTCTTCTGCATTTCCCTAGTCACCAAGCTTCTAGGGAGGCTATATTACACAGAACCAGGTGCACCAAAGCCAGGTTCACTTCCTCCAAGAGTTCAAGCTTCTGTGACTGGTGTAGCACTATGTGGCACATTAGCCGGCCAACTATTCTTTGGTTGGCTTGGTGACAAAATGGGGAGAAAAAGAGTCTATGGACTAACACTCATTCTCATGGTAGTGTGCTCCCTTGCCTCAGGACTCTCCTTTGGGTCAACTCCAGAGGGTGTCATGGCCTCACTTTGCTTCTTCAGGTTCTGGCTAGGGTTTGGGATTGGTGGTGACTACCCTCTTTCTGCCACAATCATGTCTGAATATGCCAACAAGAAGACGCGTGGCGCGTTCATAGCCGCGGTGTTTGCAATGCAAGGATTCGGAATCCTGGCTGGTGGAGTGGTGGCATTGATTGTTTCATATGCATATGACCAAAAGTACAAGCTTCCTAGTTATGAACAGAATCCAGAAGCATCCTTGGACCCCGCATTTGACTATGTTTGGAGAATAGTTTTGATGTTTGGTGCAGTTCCTGCTGCACTCACCTACTACTGGCGCATGAAGATGCCAGAGACAGCACGTTACACTGCCCTTGTGGCCAAGAATGCAAAACAAGCTGCTGCAGACATGTCTAAGGTGTTGCAAGTGGAACTTGAAGCTGAAGAGGAGAAGGTGAAGAAATTGACAGAGAATGAGAGCAACAAGTATGGTTTGTTCACCAAGGAATTTGTGAAACGCCATGGCCTGCATTTGTTGGGAACCACCACCACTTGGTTCTTGTTGGACATAGCATTCTACAGCCAAAACCTTTTCCAGAAGGACATTTTCAGTGCAATTGGGTGGATCCCTCCAGCAAAGGAAATGAATGCAATCCACGAGGTGTATAAGATTGCAAGAGCACAAACACTCATAGCACTATGCAGTACTGTGCCAGGTTACTGGTTCACAGTGGCATTAATTGATTACATGGGCCGTTTTGCCATCCAATTGTTGGGGTTCTTCTTCATGACTGTGTTCATGTTTGCTTTGGCTATACCATATGATCATTGGTCTGAGAAAGAAAACAGAATTGGGTTTGTGGTGATGTACTCTTTCACCTTTTTCTTTGCCAATTTTGGTCCAAATTCCACCACATTTGTTGTGCCAGCAGAGATTTTCCCTGCAAGGCTAAGGTCCACTTGCCATGGAATCTCTGCTGCTGCAGGAAAGGCTGGTGCAATTGTGGGTGCATTTGGGTTCCTATATGCTGCACAAAGCAAGGACCCTTCCAAGACTGATGCAGGGTACCCTACTGGTATTGGAATTAAGAACTCACTCATTATGCTTGGTGTGATCAACTTCATTGGGATGTTGTTCACCTTGCTTGTTCCAGAATCAAAGGGAAAATCACTGGAGGAGTTGAGTGGGGAGAATGGTGAAAATGATGCTGAACATGCAGTGTCTGCTAGGACAGTTCCTGTTTGA

>Glyma02g00840.3   sequence type=CDS   gene model=Glyma02g00840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGAGAATTGGGAGTTTTGAATGCACTTGATGTGGCAAAGACACAATGGTACCACTTCACTGCTATTGTGATCGCTGGAATGGGTTTCTTCACCGATGCCTATGACCTCTTCTGCATTTCCCTAGTCACCAAGCTTCTAGGGAGGCTATATTACACAGAACCAGGTGCACCAAAGCCAGGTTCACTTCCTCCAAGAGTTCAAGCTTCTGTGACTGGTGTAGCACTATGTGGCACATTAGCCGGCCAACTATTCTTTGGTTGGCTTGGTGACAAAATGGGGAGAAAAAGAGTCTATGGACTAACACTCATTCTCATGGTAGTGTGCTCCCTTGCCTCAGGACTCTCCTTTGGGTCAACTCCAGAGGGTGTCATGGCCTCACTTTGCTTCTTCAGGTTCTGGCTAGGGTTTGGGATTGGTGGTGACTACCCTCTTTCTGCCACAATCATGTCTGAATATGCCAACAAGAAGACGCGTGGCGCGTTCATAGCCGCGGTGTTTGCAATGCAAGGATTCGGAATCCTGGCTGGTGGAGTGGTGGCATTGATTGTTTCATATGCATATGACCAAAAGTACAAGCTTCCTAGTTATGAACAGAATCCAGAAGCATCCTTGGACCCCGCATTTGACTATGTTTGGAGAATAGTTTTGATGTTTGGTGCAGTTCCTGCTGCACTCACCTACTACTGGCGCATGAAGATGCCAGAGACAGCACGTTACACTGCCCTTGTGGCCAAGAATGCAAAACAAGCTGCTGCAGACATGTCTAAGGTGTTGCAAGTGGAACTTGAAGCTGAAGAGGAGAAGGTGAAGAAATTGACAGAGAATGAGAGCAACAAGTATGGTTTGTTCACCAAGGAATTTGTGAAACGCCATGGCCTGCATTTGTTGGGAACCACCACCACTTGGTTCTTGTTGGACATAGCATTCTACAGCCAAAACCTTTTCCAGAAGGACATTTTCAGTGCAATTGGGTGGATCCCTCCAGCAAAGGAAATGAATGCAATCCACGAGGTGTATAAGATTGCAAGAGCACAAACACTCATAGCACTATGCAGTACTGTGCCAGGTTACTGGTTCACAGTGGCATTAATTGATTACATGGGCCGTTTTGCCATCCAATTGTTGGGGTTCTTCTTCATGACTGTGTTCATGTTTGCTTTGGCTATACCATATGATCATTGGTCTGAGAAAGAAAACAGAATTGGGTTTGTGGTGATGTACTCTTTCACCTTTTTCTTTGCCAATTTTGGTCCAAATTCCACCACATTTGTTGTGCCAGCAGAGATTTTCCCTGCAAGGCTAAGGTCCACTTGCCATGGAATCTCTGCTGCTGCAGGAAAGGCTGGTGCAATTGTGGGTGCATTTGGGTTCCTATATGCTGCACAAAGCAAGGACCCTTCCAAGACTGATGCAGGGTACCCTACTGGTATTGGAATTAAGAACTCACTCATTATGCTTGGTGTGATCAACTTCATTGGGATGTTGTTCACCTTGCTTGTTCCAGAATCAAAGGGAAAATCACTGGAGGAGTTGAGTGGGGAGAATGGTGAAAATGATGCTGAACATGCAGTGTCTGCTAGGACAGTTCCTGTTTGA

Predicted protein sequences of Glyma02g00840

Limit To All Plant Sequences

>Glyma02g00840.2   sequence type=predicted peptide   gene model=Glyma02g00840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGELGVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRLYYTEPGAPKPGSLPPRVQASVTGVALCGTLAGQLFFGWLGDKMGRKRVYGLTLILMVVCSLASGLSFGSTPEGVMASLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILAGGVVALIVSYAYDQKYKLPSYEQNPEASLDPAFDYVWRIVLMFGAVPAALTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVELEAEEEKVKKLTENESNKYGLFTKEFVKRHGLHLLGTTTTWFLLDIAFYSQNLFQKDIFSAIGWIPPAKEMNAIHEVYKIARAQTLIALCSTVPGYWFTVALIDYMGRFAIQLLGFFFMTVFMFALAIPYDHWSEKENRIGFVVMYSFTFFFANFGPNSTTFVVPAEIFPARLRSTCHGISAAAGKAGAIVGAFGFLYAAQSKDPSKTDAGYPTGIGIKNSLIMLGVINFIGMLFTLLVPESKGKSLEELSGENGENDAEHAVSARTVPV*

>Glyma02g00840.3   sequence type=predicted peptide   gene model=Glyma02g00840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGELGVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRLYYTEPGAPKPGSLPPRVQASVTGVALCGTLAGQLFFGWLGDKMGRKRVYGLTLILMVVCSLASGLSFGSTPEGVMASLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILAGGVVALIVSYAYDQKYKLPSYEQNPEASLDPAFDYVWRIVLMFGAVPAALTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVELEAEEEKVKKLTENESNKYGLFTKEFVKRHGLHLLGTTTTWFLLDIAFYSQNLFQKDIFSAIGWIPPAKEMNAIHEVYKIARAQTLIALCSTVPGYWFTVALIDYMGRFAIQLLGFFFMTVFMFALAIPYDHWSEKENRIGFVVMYSFTFFFANFGPNSTTFVVPAEIFPARLRSTCHGISAAAGKAGAIVGAFGFLYAAQSKDPSKTDAGYPTGIGIKNSLIMLGVINFIGMLFTLLVPESKGKSLEELSGENGENDAEHAVSARTVPV*

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