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Report for Sequence Feature Glyma02g00810

Feature Type:gene_model
Chromosome:Gm02
Start:597829
stop:601945
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g00810
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G04410AT Annotation by Michelle Graham. TAIR10: Lactate/malate dehydrogenase family protein | chr1:1189418-1191267 REVERSE LENGTH=332 SoyBaseE_val: 0ISS
GO:0005975GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process SoyBaseN/AISS
GO:0006094GO-bp Annotation by Michelle Graham. GO Biological Process: gluconeogenesis SoyBaseN/AISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0006108GO-bp Annotation by Michelle Graham. GO Biological Process: malate metabolic process SoyBaseN/AISS
GO:0006833GO-bp Annotation by Michelle Graham. GO Biological Process: water transport SoyBaseN/AISS
GO:0006972GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic response SoyBaseN/AISS
GO:0007030GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi organization SoyBaseN/AISS
GO:0009266GO-bp Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0010043GO-bp Annotation by Michelle Graham. GO Biological Process: response to zinc ion SoyBaseN/AISS
GO:0044262GO-bp Annotation by Michelle Graham. GO Biological Process: cellular carbohydrate metabolic process SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0016615GO-mf Annotation by Michelle Graham. GO Molecular Function: malate dehydrogenase activity SoyBaseN/AISS
GO:0016616GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor SoyBaseN/AISS
GO:0030060GO-mf Annotation by Michelle Graham. GO Molecular Function: L-malate dehydrogenase activity SoyBaseN/AISS
KOG1496 KOG Malate dehydrogenase JGI ISS
PTHR23382Panther MALATE DEHYDROGENASE JGI ISS
PF00056PFAM lactate/malate dehydrogenase, NAD binding domain JGI ISS
PF02866PFAM lactate/malate dehydrogenase, alpha/beta C-terminal domain JGI ISS
UniRef100_Q6RIB6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Malate dehydrogenase n=1 Tax=Glycine max RepID=Q6RIB6_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q6RIB6UniRef Annotation by Michelle Graham. Best UniRef hit: Malate dehydrogenase n=1 Tax=Glycine max RepID=Q6RIB6_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g00810
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g00810
ParalogEvidenceComments
Glyma10g00920 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g00810 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g005500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g00810
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma02g00810
>Glyma02g00810.2   sequence type=transcript   gene model=Glyma02g00810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGTTAAAGTTAAACCTGCTAAAGCGGCGTCGTTTCATTCAGTCCTAGCGTGGCAACACTATCTCCACACAAATAAATACCCAAGTCTACCCTCATTTCACAACCCACACTCACTCTTTCACTCTTCTTCGTCTCAAATCTCTTCGTTCCTTCGATTCGTTCCATTTCTTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCTGCAGGGCAAATTGGGTATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGTTGGGTCCTGACCAGCCCGTGATCCTCCACATGCTTGACATTCCTCCGGCAGCAGAGTCATTGAATGGGGTTAAAATGGAATTGGTGGATGCTGCATTCCCTCTTCTTAAAGGTGTTGTTGCCACAACTGATGTGGTTGAGGCATGCACTGGGGTCAATATTGCCGTGATGGTTGGTGGATTCCCAAGAAAAGAAGGTATGGAGAGGAAGGATGTGATGACTAAGAACGTCTCCATTTACAAGTCCCAGGCTTCTGCCCTTGAAAAGCATGCTGCTGCCAACTGCAAGGTTCTTGTTGTTGCTAACCCAGCAAACACCAATGCATTGATCTTGAAGGAATTTGCTCCATCTATTCCCGAGAAGAACATTTCTTGTTTGACTAGATTGGATCACAACAGGGCATTGGGCCAAATCTCTGAAAGACTGACCGTTCAGGTTTCTGATGTAAAGAATGTCATTATCTGGGGCAATCACTCATCAACCCAGTATCCTGATGTTAATCATGCAACTGTTGCAACCTCAGCTGGGGAGAAGCCCGTCCGTGAGCTTATAGCTGATGATGCCTGGTTGAATGGGGAATTCATTACTACTGTTCAACAACGTGGCGCTGCAATTATCAAAGCTAGAAAGCTTTCAAGTGCACTATCAGCTGCTAGTGCTGCTTGTGACCATATTAGAGACTGGGTTCTTGGAACTCCTCAGGGCACTTGGGTATCAATGGGAGTATATTCTGATGGTTCCTACAATGTTCCAGCTGGACTTATATATTCATTCCCCGTCACTTGTGCCAATGGGGAATGGGCAATAGTTCAAGGTAAGTGTTTTGTCACTTAATATTGTGTTTATCCATATTATCTCACCATCTTTGGTGTTAACCCTTGCTTAATTTGCCGGTGTTTGTTTTTGCTTTAATATTTTTACATTTTTATATTAAAAAGTCACTGAAATTTCAACAATTCGGGGTAGAGCTTTCTAATGCCACTGAAATTA
Coding sequences of Glyma02g00810
>Glyma02g00810.1   sequence type=CDS   gene model=Glyma02g00810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCTGCAGGGCAAATTGGGTATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGTTGGGTCCTGACCAGCCCGTGATCCTCCACATGCTTGACATTCCTCCGGCAGCAGAGTCATTGAATGGGGTTAAAATGGAATTGGTGGATGCTGCATTCCCTCTTCTTAAAGGTGTTGTTGCCACAACTGATGTGGTTGAGGCATGCACTGGGGTCAATATTGCCGTGATGGTTGGTGGATTCCCAAGAAAAGAAGGTATGGAGAGGAAGGATGTGATGACTAAGAACGTCTCCATTTACAAGTCCCAGGCTTCTGCCCTTGAAAAGCATGCTGCTGCCAACTGCAAGGTTCTTGTTGTTGCTAACCCAGCAAACACCAATGCATTGATCTTGAAGGAATTTGCTCCATCTATTCCCGAGAAGAACATTTCTTGTTTGACTAGATTGGATCACAACAGGGCATTGGGCCAAATCTCTGAAAGACTGACCGTTCAGGTTTCTGATGTAAAGAATGTCATTATCTGGGGCAATCACTCATCAACCCAGTATCCTGATGTTAATCATGCAACTGTTGCAACCTCAGCTGGGGAGAAGCCCGTCCGTGAGCTTATAGCTGATGATGCCTGGTTGAATGGGGAATTCATTACTACTGTTCAACAACGTGGCGCTGCAATTATCAAAGCTAGAAAGCTTTCAAGTGCACTATCAGCTGCTAGTGCTGCTTGTGACCATATTAGAGACTGGGTTCTTGGAACTCCTCAGGGCACTTGGGTATCAATGGGAGTATATTCTGATGGTTCCTACAATGTTCCAGCTGGACTTATATATTCATTCCCCGTCACTTGTGCCAATGGGGAATGGGCAATAGTTCAAGGACTTTCCATTGATGAGTTCTCAAGGAAGAAGTTGGACTTGACTGCAGAAGAGCTTTCTGAGGAGAAGGCATTGGCTTACTCATGCCTAAATTAG

>Glyma02g00810.2   sequence type=CDS   gene model=Glyma02g00810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCTGCAGGGCAAATTGGGTATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGTTGGGTCCTGACCAGCCCGTGATCCTCCACATGCTTGACATTCCTCCGGCAGCAGAGTCATTGAATGGGGTTAAAATGGAATTGGTGGATGCTGCATTCCCTCTTCTTAAAGGTGTTGTTGCCACAACTGATGTGGTTGAGGCATGCACTGGGGTCAATATTGCCGTGATGGTTGGTGGATTCCCAAGAAAAGAAGGTATGGAGAGGAAGGATGTGATGACTAAGAACGTCTCCATTTACAAGTCCCAGGCTTCTGCCCTTGAAAAGCATGCTGCTGCCAACTGCAAGGTTCTTGTTGTTGCTAACCCAGCAAACACCAATGCATTGATCTTGAAGGAATTTGCTCCATCTATTCCCGAGAAGAACATTTCTTGTTTGACTAGATTGGATCACAACAGGGCATTGGGCCAAATCTCTGAAAGACTGACCGTTCAGGTTTCTGATGTAAAGAATGTCATTATCTGGGGCAATCACTCATCAACCCAGTATCCTGATGTTAATCATGCAACTGTTGCAACCTCAGCTGGGGAGAAGCCCGTCCGTGAGCTTATAGCTGATGATGCCTGGTTGAATGGGGAATTCATTACTACTGTTCAACAACGTGGCGCTGCAATTATCAAAGCTAGAAAGCTTTCAAGTGCACTATCAGCTGCTAGTGCTGCTTGTGACCATATTAGAGACTGGGTTCTTGGAACTCCTCAGGGCACTTGGGTATCAATGGGAGTATATTCTGATGGTTCCTACAATGTTCCAGCTGGACTTATATATTCATTCCCCGTCACTTGTGCCAATGGGGAATGGGCAATAGTTCAAGGTAAGTGTTTTGTCACTTAA
Predicted protein sequences of Glyma02g00810
>Glyma02g00810.1   sequence type=predicted peptide   gene model=Glyma02g00810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPVILHMLDIPPAAESLNGVKMELVDAAFPLLKGVVATTDVVEACTGVNIAVMVGGFPRKEGMERKDVMTKNVSIYKSQASALEKHAAANCKVLVVANPANTNALILKEFAPSIPEKNISCLTRLDHNRALGQISERLTVQVSDVKNVIIWGNHSSTQYPDVNHATVATSAGEKPVRELIADDAWLNGEFITTVQQRGAAIIKARKLSSALSAASAACDHIRDWVLGTPQGTWVSMGVYSDGSYNVPAGLIYSFPVTCANGEWAIVQGLSIDEFSRKKLDLTAEELSEEKALAYSCLN*

>Glyma02g00810.2   sequence type=predicted peptide   gene model=Glyma02g00810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPVILHMLDIPPAAESLNGVKMELVDAAFPLLKGVVATTDVVEACTGVNIAVMVGGFPRKEGMERKDVMTKNVSIYKSQASALEKHAAANCKVLVVANPANTNALILKEFAPSIPEKNISCLTRLDHNRALGQISERLTVQVSDVKNVIIWGNHSSTQYPDVNHATVATSAGEKPVRELIADDAWLNGEFITTVQQRGAAIIKARKLSSALSAASAACDHIRDWVLGTPQGTWVSMGVYSDGSYNVPAGLIYSFPVTCANGEWAIVQGKCFVT*






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