Glyma02g00790 - SoyBase

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Report for Sequence Feature Glyma02g00790

Feature Type:	gene_model
Chromosome:	Gm02
Start:	583937
stop:	591332
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g00790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G23270	AT	Annotation by Michelle Graham. TAIR10: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain \| chr3:8316436-8320337 FORWARD LENGTH=1045	SoyBase	E_val: 0	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0009827	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification	SoyBase	N/A	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003682	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chromatin binding	SoyBase	N/A	ISS
GO:0005543	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phospholipid binding	SoyBase	N/A	ISS
GO:0008536	GO-mf	Annotation by Michelle Graham. GO Molecular Function: Ran GTPase binding	SoyBase	N/A	ISS
GO:0035091	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol binding	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
KOG1427	KOG	Uncharacterized conserved protein, contains RCC1 domain	JGI		ISS
PTHR22870	Panther	REGULATOR OF CHROMOSOME CONDENSATION	JGI		ISS
PTHR22870:SF25	Panther	REGULATOR OF CHROMOSOME CONDENSATION-RELATED	JGI		ISS
PF00415	PFAM	Regulator of chromosome condensation (RCC1) repeat	JGI		ISS
PF01363	PFAM	FYVE zinc finger	JGI		ISS
PF08381	PFAM	Disease resistance/zinc finger/chromosome condensation-like region	JGI		ISS
UniRef100_G7I4N4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine protein kinase Nek9 n=1 Tax=Medicago truncatula RepID=G7I4N4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233796E	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233796E related cluster n=1 Tax=unknown RepID=UPI000233796E	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g00790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g00790

Paralog	Evidence	Comments
Glyma10g00900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g00790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g005300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g00790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g00790

Limit To All Plant Sequences

>Glyma02g00790.2   sequence type=CDS   gene model=Glyma02g00790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGATCTTGCTAGCTTTGGGAGTCATGAGCGTGATGTTGAGCAAGATGAAACGAAACTGATTTGGATATCTCATGGAAGGGAAAAGAATCTAAAATTGTCTTCTGTTTCACACATCATCCCAGGACAGAGAACAGCTGTCTTTAGAAGATACTTGCGTCCTGAAAAGGATTATCTGTCATTTTCACTTATTTATAAAAAGGGGGAACGATCACTTGATCTGATTTGCAAGGACCAAGCTGAGGTAGAGGTATGGTTTTCAAGCCTTAAGGCATTAATTTCCCGTGGAGAGCGTATTAGGCGTGGAAAAAGTGATTTATCCAATGAAAGTGTTGACTTAATTCCAAATGATCGTCCTAATGCTGGAACACTAGAGTTTGCATCAAGCATTGCCCGTGGCAGGTTTTCTTTTGAATCAGTATCTCATGAATCTACATCATCTTGCTCTAGATCAGATACAAATATGCCAGTAAGGACAAGTTGTGGAGATGGTTCTCGTGTTAGTGTATCAAGTGTTAGCCACTCAAGTAGTGTAGGATCAGGACTAGATGACATAGAATCTCTAGGTGATGTTTATATATGGGGAGAGGTTTGGGTAGATGGCAATTCATCTGATGGATTGGGGAGTCTAGCCTCTTGTAAGACCGATGTGCTGACTCCTAAACCATTGGAGTCTGATGTTGTTCTTGATGTCCATCAGATTGGGCCTGGTGATCGTCACATTGCTCTAGTTACAAGGCAGGGAGAGGTTTTTACTTGGGGAGAGGACTCTGGTGGAAGACTTGGTCATGGATTTGAAAAAGATTTTGGTAGACCTCATCTTGTGGAGTCCCTGGCAATTACCAATGTGACTTTTGTTGCATGTGGCGAGTATCATTCATGTGCTGTGTCATCATCTGGTGACCTATTCACCTGGGGTGATGGTACACATGGTGCAGGACTTCTTGGTCATGGCACTGATGTTAGCTACTGGATACCAAAAAGGGTTAGTGGTCCTTTAGAGGGACTTCAGGTTGTATCTGTAGCATGTGGAACATGGCATTCAGCATTAGCAACCTCCAATGGGAAGTTGTTTACCATTGGTGATGGAAGATTTGGTGTATTGGGCCATGGAGACCGAGATAGTGTGGCATATCCAAAGGAGGTACAATTATTGAGTGGACATAAGGCTATTAAGGTTGCATGTGGAGTGTGGCACTCAGCAGCCATTATAGAGGTTATGGGTCCTTCTGGTTCAAACACTTCAGCCAAGAGGCTCTTCACATGGGGTGATGGCGACCAATATCGTTTGGGTCATGTTAACAAGGAAACTTACCTTGAACCAACTTGTGTAGCTGCAGTTGCTGAGTATAATTTTCACCAGGTTGCATGTGGGTACACTATGACTGTTGCACTCACTACATCTGGTCATGTTTTTACTATGGGAGGCACAGCATATGGTCAACTAGGAAATCCAAATTCTGATGGAAAAGTGCCAATTCTAGTCCGAGGTAAGTTAGTAGGAGAGTTTGTGGAGGAAATATCATGTGGGGCCAATCATGTTGCTGTGTTGACTTCAAGAAGTGAATTATATACTTGGGGGAGAGGTGCCAATGGAAGACTAGGACATGGAGACACAGATGATCAGAAATCTCCAACAATGGTGGAAGCCTTGAAAGACAGGCATATTAAGAACATCTCATGTGGTTCGACCTTTACATCTTGCATATGCCTACATAAATGGGTTTCTGGAGTTGACCAATCTGTTTGCTCTGATTGTCGACAACCATTTGGTTTTACCCGAAAAAGGCGTAATTGCTATCATTGTGGATTGGTGTATTGCCATCCTTGTAGTTCAAAAAAGGCTTCAAAAGCAGCACTGGCTCCAACACCTAGCAAACCACATCGTGTGTGTGATGCTTGTTATGCTAAGCTAAAAGGTTCTGATAGTGCTTCCAATTTTAATAGGGACATTAGTCGTCCATCTAGTTCCATATATGGAAGGGAAAGTTTTCACCGGGGAGAGGTAAGGTCTTCAAGAGTTCTCTTGCCTCCTACCATAGAACCGGTTAAATACCTTGAGATTAGGACTAATAAGCCTGGAAGTACACATGACTCCATAGTCCGAGCTGCTCAAGTTCCTACGAGTTTACAATTGAAAGATGTTTCATTTCCAATTTCATTGAGTTCTGTGCAGAATGTTTACAAACCCGTTATACAGCCAAGTCAACCTCCAACTCCACCAACATCAGCTACTCCAATACCCATGTCACCATATGCTAGAAGACCACCAAGCCCACCGCGTTCTACCTCCCCTGGATTTTCAAGAAGCCTTATTGATAATTTAAGGAAGAAAAATGATCATTTGAATCAAGAAGTTACAAAATGGCAAAACAAAAATCAAAATTTGGAGCAGAAGAGTGACATGCAAGATATGAAGATTCAGGAGCTTCAGAAAAATATTGAAGAAGCCATGTCACAATTTGGAGAGGAATCTTCTAAGCTTAGAGAAGCAAAGGAATTTATTAAGTCCTTGGCAGATAAGTTGAGGGAAGTGACTGAGAAGTTGCCACCTGAGATTCCTGACAAAGAGACCTTGAGAACCATGCATGCTCAAGCTGAAGAATTTCTACATGAAGAAAAAGATTTTGAATCTTCTTCCTCCCCACAGAGCCTTGAGTCTGAGCAACAAAGTGCACCTGATGTACCTGCCTCAGATAGTGACTCTTCAAAACTCCAACAGCAAAGAGTGGAAGGAAATGATGATGCTTCTGGGGTTGTTCCATCTATAGATGGAGAAAATATTCTTGAAGAAAGCAGCAACTCATCTGTATCTAGTCTAGTAGTGATTCCACCAAGCTCAGGAAATGGTTCAAAATTGCATGACTCTGGTATACCTGTGAAAGAAGGAGAAAAATCAGTCATTGAACAATTTGAGCATGGTGTTTATGGCACACTCGTAGTACTACCTAGTGGTTACAAAGTTTTCAAACGAATTAGATTCAGTAAACGAAGATTCAACGAGCAGCAAGCAGAAGAATGGTGGAACCAGAACAAAGATAAGGTGCTTAGTAAATACAGTCCACCAGCCACAAAAAATTCAAAAACTGGATCATCTATTACCCCTCCACATGCTGAAGAGAATAGTGAGGCTTTACCTTCTTCCTAA

Predicted protein sequences of Glyma02g00790

Limit To All Plant Sequences

>Glyma02g00790.2   sequence type=predicted peptide   gene model=Glyma02g00790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADLASFGSHERDVEQDETKLIWISHGREKNLKLSSVSHIIPGQRTAVFRRYLRPEKDYLSFSLIYKKGERSLDLICKDQAEVEVWFSSLKALISRGERIRRGKSDLSNESVDLIPNDRPNAGTLEFASSIARGRFSFESVSHESTSSCSRSDTNMPVRTSCGDGSRVSVSSVSHSSSVGSGLDDIESLGDVYIWGEVWVDGNSSDGLGSLASCKTDVLTPKPLESDVVLDVHQIGPGDRHIALVTRQGEVFTWGEDSGGRLGHGFEKDFGRPHLVESLAITNVTFVACGEYHSCAVSSSGDLFTWGDGTHGAGLLGHGTDVSYWIPKRVSGPLEGLQVVSVACGTWHSALATSNGKLFTIGDGRFGVLGHGDRDSVAYPKEVQLLSGHKAIKVACGVWHSAAIIEVMGPSGSNTSAKRLFTWGDGDQYRLGHVNKETYLEPTCVAAVAEYNFHQVACGYTMTVALTTSGHVFTMGGTAYGQLGNPNSDGKVPILVRGKLVGEFVEEISCGANHVAVLTSRSELYTWGRGANGRLGHGDTDDQKSPTMVEALKDRHIKNISCGSTFTSCICLHKWVSGVDQSVCSDCRQPFGFTRKRRNCYHCGLVYCHPCSSKKASKAALAPTPSKPHRVCDACYAKLKGSDSASNFNRDISRPSSSIYGRESFHRGEVRSSRVLLPPTIEPVKYLEIRTNKPGSTHDSIVRAAQVPTSLQLKDVSFPISLSSVQNVYKPVIQPSQPPTPPTSATPIPMSPYARRPPSPPRSTSPGFSRSLIDNLRKKNDHLNQEVTKWQNKNQNLEQKSDMQDMKIQELQKNIEEAMSQFGEESSKLREAKEFIKSLADKLREVTEKLPPEIPDKETLRTMHAQAEEFLHEEKDFESSSSPQSLESEQQSAPDVPASDSDSSKLQQQRVEGNDDASGVVPSIDGENILEESSNSSVSSLVVIPPSSGNGSKLHDSGIPVKEGEKSVIEQFEHGVYGTLVVLPSGYKVFKRIRFSKRRFNEQQAEEWWNQNKDKVLSKYSPPATKNSKTGSSITPPHAEENSEALPSS*

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