SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G04420 | AT | Annotation by Michelle Graham. TAIR10: NAD(P)-linked oxidoreductase superfamily protein | chr1:1191634-1193699 FORWARD LENGTH=412 | SoyBase | E_val: 0 | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0004033 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: aldo-keto reductase (NADP) activity | SoyBase | N/A | ISS |
| KOG1575 | KOG | Voltage-gated shaker-like K+ channel, subunit beta/KCNAB | JGI | ISS | |
| PTHR11732 | Panther | ALDO/KETO REDUCTASE | JGI | ISS | |
| PTHR11732:SF15 | Panther | GLUCOSE--FRUCTOSE OXIDOREDUCTASE | JGI | ISS | |
| PF00248 | PFAM | Aldo/keto reductase family | JGI | ISS | |
| UniRef100_G7I4M8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Aldo-keto reductase n=1 Tax=Medicago truncatula RepID=G7I4M8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JB81 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JB81_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g00780 not represented in the dataset |
Glyma02g00780 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g005200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g00780.1 sequence type=CDS gene model=Glyma02g00780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTATCTCTGTGTTCCTTCACTTCTTTTGCATGTGACAACCTTTCTCTTTCTCTTTCTCAGTCTCTCAAACCGTCATCATTGCCTCTCATTCACTCTTTCACACTTCCAAGAAACACTATCAGGAAGAAGAACGGTGCTAGTGTGAGGCCTCTGTTCTGTGCCCTCAACAACAATAACAACAACACTGCCTTGCAGTACAGAACCCTCGGCGACTCCGACCTCAACATCAGCGAAATCACTCTTGGTACTATGACCTTTGGGGAGCAAAACACTGAGAAAGAAGCTCACGACATTCTTAATTATGCATTCGACCGTGGAATTAACGCTCTCGACACTGCTGAGGCCTACCCAATTCCAATGAAGAAAGAGACACAAGGAAGCACTGATCTCTATATTGGTAGCTGGCTCAAGTCTCAACCTCGTGACAAGATTATTTTGGCTACCAAAGTATGTGGTTATTCTGAGAGGTCAAGTTACTTGCGTGAGAATGCAAATGTTTTGCGGGTTGATGCTGCAAATATCAAAGAAAGTGTAGAGAAAAGCCTTAAGCGCCTCGACACTGATTATATTGATTTGCTGCAAATTCACTGGCCAGATCGATATGTTGCATTGTTTGGCGAGTTTTCCTATGATTATTCAAAATGGAGATCCAGTGTGCCATTTGTTGAGCAATTGCAAGCTTTCCAAGAACTTATCAATGAGGGAAAGGTACGCTACATAGGTGTTTCAAATGAGACTTCATATGGAGTGATGGAGTTTGTTCATGCATCGAAAGTTGAAGGCCTTCCAAAGATTGTCAGTATCCAAAACAGCTACAGCTTGCTTGTTAGATGTCGTTTTGAAGTTGATCTTGTGGAAGTTTGCCATCCAAAGAATTGCAATATTGGCTTACTAGCCTATTCCCCACTTGGAGGTGGATCACTCACAGGAAAATATATAGATATAAATTCTGAAGCTGCAAAAAGTGGAAGGCTTAACCTCTTCCCTGGTTACATGGAAAGATATAACAAATCAGTGGCACGGGAAGCTACTATTAAGTATCTTGAGTTGGCCAAGAAGCATGGGCTAACTCCTGTTCAACTTGCACTTGGATTTGCAAGAGATCGTCCATTCATGACAAGTTCAATAATTGGTGCAACCTCTGTGGACCAGCTAAAAGAAGATATTGATGCTTTCACAACAACTGAGAGACCTTTACCAGCAGAAGTCATGGCAGATATTGAAGCTATCTTCAAGAGATACAAAGATCCTGCCATTCTTTAA
>Glyma02g00780.1 sequence type=predicted peptide gene model=Glyma02g00780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVSLCSFTSFACDNLSLSLSQSLKPSSLPLIHSFTLPRNTIRKKNGASVRPLFCALNNNNNNTALQYRTLGDSDLNISEITLGTMTFGEQNTEKEAHDILNYAFDRGINALDTAEAYPIPMKKETQGSTDLYIGSWLKSQPRDKIILATKVCGYSERSSYLRENANVLRVDAANIKESVEKSLKRLDTDYIDLLQIHWPDRYVALFGEFSYDYSKWRSSVPFVEQLQAFQELINEGKVRYIGVSNETSYGVMEFVHASKVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCNIGLLAYSPLGGGSLTGKYIDINSEAAKSGRLNLFPGYMERYNKSVAREATIKYLELAKKHGLTPVQLALGFARDRPFMTSSIIGATSVDQLKEDIDAFTTTERPLPAEVMADIEAIFKRYKDPAIL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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