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Report for Sequence Feature Glyma02g00780

Feature Type:gene_model
Chromosome:Gm02
Start:574680
stop:579321
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g00780
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G04420AT Annotation by Michelle Graham. TAIR10: NAD(P)-linked oxidoreductase superfamily protein | chr1:1191634-1193699 FORWARD LENGTH=412 SoyBaseE_val: 0ISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0004033GO-mf Annotation by Michelle Graham. GO Molecular Function: aldo-keto reductase (NADP) activity SoyBaseN/AISS
KOG1575 KOG Voltage-gated shaker-like K+ channel, subunit beta/KCNAB JGI ISS
PTHR11732Panther ALDO/KETO REDUCTASE JGI ISS
PTHR11732:SF15Panther GLUCOSE--FRUCTOSE OXIDOREDUCTASE JGI ISS
PF00248PFAM Aldo/keto reductase family JGI ISS
UniRef100_G7I4M8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Aldo-keto reductase n=1 Tax=Medicago truncatula RepID=G7I4M8_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1JB81UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JB81_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g00780
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g00780 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g005200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g00780
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g00780
>Glyma02g00780.1   sequence type=CDS   gene model=Glyma02g00780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTATCTCTGTGTTCCTTCACTTCTTTTGCATGTGACAACCTTTCTCTTTCTCTTTCTCAGTCTCTCAAACCGTCATCATTGCCTCTCATTCACTCTTTCACACTTCCAAGAAACACTATCAGGAAGAAGAACGGTGCTAGTGTGAGGCCTCTGTTCTGTGCCCTCAACAACAATAACAACAACACTGCCTTGCAGTACAGAACCCTCGGCGACTCCGACCTCAACATCAGCGAAATCACTCTTGGTACTATGACCTTTGGGGAGCAAAACACTGAGAAAGAAGCTCACGACATTCTTAATTATGCATTCGACCGTGGAATTAACGCTCTCGACACTGCTGAGGCCTACCCAATTCCAATGAAGAAAGAGACACAAGGAAGCACTGATCTCTATATTGGTAGCTGGCTCAAGTCTCAACCTCGTGACAAGATTATTTTGGCTACCAAAGTATGTGGTTATTCTGAGAGGTCAAGTTACTTGCGTGAGAATGCAAATGTTTTGCGGGTTGATGCTGCAAATATCAAAGAAAGTGTAGAGAAAAGCCTTAAGCGCCTCGACACTGATTATATTGATTTGCTGCAAATTCACTGGCCAGATCGATATGTTGCATTGTTTGGCGAGTTTTCCTATGATTATTCAAAATGGAGATCCAGTGTGCCATTTGTTGAGCAATTGCAAGCTTTCCAAGAACTTATCAATGAGGGAAAGGTACGCTACATAGGTGTTTCAAATGAGACTTCATATGGAGTGATGGAGTTTGTTCATGCATCGAAAGTTGAAGGCCTTCCAAAGATTGTCAGTATCCAAAACAGCTACAGCTTGCTTGTTAGATGTCGTTTTGAAGTTGATCTTGTGGAAGTTTGCCATCCAAAGAATTGCAATATTGGCTTACTAGCCTATTCCCCACTTGGAGGTGGATCACTCACAGGAAAATATATAGATATAAATTCTGAAGCTGCAAAAAGTGGAAGGCTTAACCTCTTCCCTGGTTACATGGAAAGATATAACAAATCAGTGGCACGGGAAGCTACTATTAAGTATCTTGAGTTGGCCAAGAAGCATGGGCTAACTCCTGTTCAACTTGCACTTGGATTTGCAAGAGATCGTCCATTCATGACAAGTTCAATAATTGGTGCAACCTCTGTGGACCAGCTAAAAGAAGATATTGATGCTTTCACAACAACTGAGAGACCTTTACCAGCAGAAGTCATGGCAGATATTGAAGCTATCTTCAAGAGATACAAAGATCCTGCCATTCTTTAA
Predicted protein sequences of Glyma02g00780
>Glyma02g00780.1   sequence type=predicted peptide   gene model=Glyma02g00780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSLCSFTSFACDNLSLSLSQSLKPSSLPLIHSFTLPRNTIRKKNGASVRPLFCALNNNNNNTALQYRTLGDSDLNISEITLGTMTFGEQNTEKEAHDILNYAFDRGINALDTAEAYPIPMKKETQGSTDLYIGSWLKSQPRDKIILATKVCGYSERSSYLRENANVLRVDAANIKESVEKSLKRLDTDYIDLLQIHWPDRYVALFGEFSYDYSKWRSSVPFVEQLQAFQELINEGKVRYIGVSNETSYGVMEFVHASKVEGLPKIVSIQNSYSLLVRCRFEVDLVEVCHPKNCNIGLLAYSPLGGGSLTGKYIDINSEAAKSGRLNLFPGYMERYNKSVAREATIKYLELAKKHGLTPVQLALGFARDRPFMTSSIIGATSVDQLKEDIDAFTTTERPLPAEVMADIEAIFKRYKDPAIL*






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