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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G18420 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2363 (InterPro:IPR019312); Has 233 Blast hits to 233 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 2; Plants - 59; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink). | chr5:6105638-6109337 REVERSE | SoyBase | E_val: 0 | ISS |
| GO:0000085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009630 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gravitropism | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0009644 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to high light intensity | SoyBase | N/A | ISS |
| GO:0042542 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG4508 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR15975 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF10155 | PFAM | Uncharacterized conserved protein (DUF2363) | JGI | ISS | |
| UniRef100_I1JB78 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JB78_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q2QWE6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q2QWE6_ORYSJ | SoyBase | E_val: 1.00E-161 | ISS |
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Glyma02g00750 not represented in the dataset |
Glyma02g00750 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g005000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g00750.2 sequence type=transcript gene model=Glyma02g00750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGTAAAAGGCATCCGATAAAATAAAAATAAATCTTGCAGTGTTAATGATTTGGTTGTTGTTCATGGTGTTAAGTGATAACAGAAGGGAGAAGCAAAACCTAGAAATCGCGCTCGTTGGTTTTGACTTGGAGTGAGTGGGTGAAACCGAAACCCTAACTAATATTGAAGAAGAAGATGAGCATTCGAAGGTTGAGTGGCGAAGAATCGCAAACACTTTACTCTCTCCTCAGAGCAGAGCAGCGTCCACTCCATGAGATCCTCTCCCAATTCAACTCCGCAATCCCTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTAGTTGAGGCTTATTCATCCCAGAAACCGGCTTCAAATCCCTTCATAAGCTTTATTGTAAATGCTTCCTGTAATGAAGGGTCAGAAAAAGTTGAGAGGGCATTTATTCTACAGCTACTAGGTCTCAATAGCTCCAACAGTGGGAAAGAGTTTCTTAAACAGTCTGCATCAGATTATGTGAAAGGATTTGATCAGTCATTACATGAGTTCCCTCCACTAGATCAATTGAAGCAGCAGTTTTCTGATAAAGTTCATCTAGAACTATACCATTGCTTATTTAAAGATGGCTCTGTAAAAAATGTAGTCCCCGACCCAGATGTTCCCCCAAGTTGTGATGCAGATTCTGTAGAGTTTGATTTGCGACCTGGAACAAAACCTAAACATGGTGCCGGAGATAAAGATGAGGCACTAGTTGGGTTGTTGTCAAATCTTTCATTGGAAGGATTAAGTCCTCACTGGATCAGACCCCTTCCACCAAGGCTGCCGATAATTGATGGGGAGCTAGTTTGGCTCAATCCTGATGACAATCATGAACTTATGTGGGACTATGGTATGTGTGTTGATACCAGCAGAGGGGCTGCAGTAAGGGACTTAATTGCGAAAGCTCTGAAGGGAGCCCTTGCACCTGCACAGCAAGAGCAAGTCCTGGTGGAGTTTGCAAATGATCCAAAACTTGTATATCACTGTGGACTGACACCAAGAAAGTTGCCAGACCTGGTGGAAAACAATCCCCTTATTGCAGTTGACGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGAATACTTTACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGTTGTGAACAGGCTGACAACAGCTGTTGAACTACCATCTCAATTCATTCACATGTACATAACTAATTGTATAGCATCTTGTGTGGGCATCAAGGATAAATACATGCAGAACAGGCTTGTGAGACTTGTCTGTGTTTTTCTGCAAAGCCTCATTCGGAACAATATTATTAATGGTGAGTTTACCCAGTTGGACATTATTGAATTGTAACATTATTGTCTTTAAAAATTGTAGGTCTCTAGTAAAGGAAAGAAAGGAAGATAAATTGTTTGTTAATAACTAGTTTTACTCTGGATTAGTTATACAATTGGTGATAAGCGGAAGGTGTAGAAATAGCATACTTGAACAGGTTCAGAATTTGTTTAAACTGTTGTAGATAATATTTTAAATGACAAGTTCTTT
>Glyma02g00750.1 sequence type=CDS gene model=Glyma02g00750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGCATTCGAAGGTTGAGTGGCGAAGAATCGCAAACACTTTACTCTCTCCTCAGAGCAGAGCAGCGTCCACTCCATGAGATCCTCTCCCAATTCAACTCCGCAATCCCTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTAGTTGAGGCTTATTCATCCCAGAAACCGGCTTCAAATCCCTTCATAAGCTTTATTGTAAATGCTTCCTGTAATGAAGGGTCAGAAAAAGTTGAGAGGGCATTTATTCTACAGCTACTAGGTCTCAATAGCTCCAACAGTGGGAAAGAGTTTCTTAAACAGTCTGCATCAGATTATGTGAAAGGATTTGATCAGTCATTACATGAGTTCCCTCCACTAGATCAATTGAAGCAGCAGTTTTCTGATAAAGTTCATCTAGAACTATACCATTGCTTATTTAAAGATGGCTCTGTAAAAAATGTAGTCCCCGACCCAGATGTTCCCCCAAGTTGTGATGCAGATTCTGTAGAGTTTGATTTGCGACCTGGAACAAAACCTAAACATGGTGCCGGAGATAAAGATGAGGCACTAGTTGGGTTGTTGTCAAATCTTTCATTGGAAGGATTAAGTCCTCACTGGATCAGACCCCTTCCACCAAGGCTGCCGATAATTGATGGGGAGCTAGTTTGGCTCAATCCTGATGACAATCATGAACTTATGTGGGACTATGGTATGTGTGTTGATACCAGCAGAGGGGCTGCAGTAAGGGACTTAATTGCGAAAGCTCTGAAGGGAGCCCTTGCACCTGCACAGCAAGAGCAAGTCCTGGTGGAGTTTGCAAATGATCCAAAACTTGTATATCACTGTGGACTGACACCAAGAAAGTTGCCAGACCTGGTGGAAAACAATCCCCTTATTGCAGTTGACGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGAATACTTTACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGTTGTGAACAGGCTGACAACAGCTGTTGAACTACCATCTCAATTCATTCACATGTACATAACTAATTGTATAGCATCTTGTGTGGGCATCAAGGATAAATACATGCAGAACAGGCTTGTGAGACTTGTCTGTGTTTTTCTGCAAAGCCTCATTCGGAACAATATTATTAATGTTAAAGATCTCTTCATTGAAGTTCAAGCGTTTTGCATCGAGTTTTCACGTATTAGAGAGGCAGCTGCGTTATTTAGGCTGCTCAAGTCATTGGAATGA >Glyma02g00750.2 sequence type=CDS gene model=Glyma02g00750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGCATTCGAAGGTTGAGTGGCGAAGAATCGCAAACACTTTACTCTCTCCTCAGAGCAGAGCAGCGTCCACTCCATGAGATCCTCTCCCAATTCAACTCCGCAATCCCTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTAGTTGAGGCTTATTCATCCCAGAAACCGGCTTCAAATCCCTTCATAAGCTTTATTGTAAATGCTTCCTGTAATGAAGGGTCAGAAAAAGTTGAGAGGGCATTTATTCTACAGCTACTAGGTCTCAATAGCTCCAACAGTGGGAAAGAGTTTCTTAAACAGTCTGCATCAGATTATGTGAAAGGATTTGATCAGTCATTACATGAGTTCCCTCCACTAGATCAATTGAAGCAGCAGTTTTCTGATAAAGTTCATCTAGAACTATACCATTGCTTATTTAAAGATGGCTCTGTAAAAAATGTAGTCCCCGACCCAGATGTTCCCCCAAGTTGTGATGCAGATTCTGTAGAGTTTGATTTGCGACCTGGAACAAAACCTAAACATGGTGCCGGAGATAAAGATGAGGCACTAGTTGGGTTGTTGTCAAATCTTTCATTGGAAGGATTAAGTCCTCACTGGATCAGACCCCTTCCACCAAGGCTGCCGATAATTGATGGGGAGCTAGTTTGGCTCAATCCTGATGACAATCATGAACTTATGTGGGACTATGGTATGTGTGTTGATACCAGCAGAGGGGCTGCAGTAAGGGACTTAATTGCGAAAGCTCTGAAGGGAGCCCTTGCACCTGCACAGCAAGAGCAAGTCCTGGTGGAGTTTGCAAATGATCCAAAACTTGTATATCACTGTGGACTGACACCAAGAAAGTTGCCAGACCTGGTGGAAAACAATCCCCTTATTGCAGTTGACGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGAATACTTTACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGTTGTGAACAGGCTGACAACAGCTGTTGAACTACCATCTCAATTCATTCACATGTACATAACTAATTGTATAGCATCTTGTGTGGGCATCAAGGATAAATACATGCAGAACAGGCTTGTGAGACTTGTCTGTGTTTTTCTGCAAAGCCTCATTCGGAACAATATTATTAATGGTGAGTTTACCCAGTTGGACATTATTGAATTGTAA
>Glyma02g00750.1 sequence type=predicted peptide gene model=Glyma02g00750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSIRRLSGEESQTLYSLLRAEQRPLHEILSQFNSAIPSSRHFTLSSYLLILLQDNKVLSTTERLIAFALLVEAYSSQKPASNPFISFIVNASCNEGSEKVERAFILQLLGLNSSNSGKEFLKQSASDYVKGFDQSLHEFPPLDQLKQQFSDKVHLELYHCLFKDGSVKNVVPDPDVPPSCDADSVEFDLRPGTKPKHGAGDKDEALVGLLSNLSLEGLSPHWIRPLPPRLPIIDGELVWLNPDDNHELMWDYGMCVDTSRGAAVRDLIAKALKGALAPAQQEQVLVEFANDPKLVYHCGLTPRKLPDLVENNPLIAVDVLTKLINSPEIAEYFTVLVNMDMSLHSMEVVNRLTTAVELPSQFIHMYITNCIASCVGIKDKYMQNRLVRLVCVFLQSLIRNNIINVKDLFIEVQAFCIEFSRIREAAALFRLLKSLE* >Glyma02g00750.2 sequence type=predicted peptide gene model=Glyma02g00750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSIRRLSGEESQTLYSLLRAEQRPLHEILSQFNSAIPSSRHFTLSSYLLILLQDNKVLSTTERLIAFALLVEAYSSQKPASNPFISFIVNASCNEGSEKVERAFILQLLGLNSSNSGKEFLKQSASDYVKGFDQSLHEFPPLDQLKQQFSDKVHLELYHCLFKDGSVKNVVPDPDVPPSCDADSVEFDLRPGTKPKHGAGDKDEALVGLLSNLSLEGLSPHWIRPLPPRLPIIDGELVWLNPDDNHELMWDYGMCVDTSRGAAVRDLIAKALKGALAPAQQEQVLVEFANDPKLVYHCGLTPRKLPDLVENNPLIAVDVLTKLINSPEIAEYFTVLVNMDMSLHSMEVVNRLTTAVELPSQFIHMYITNCIASCVGIKDKYMQNRLVRLVCVFLQSLIRNNIINGEFTQLDIIEL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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