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Report for Sequence Feature Glyma02g00730

Feature Type:gene_model
Chromosome:Gm02
Start:520056
stop:524702
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g00730
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G14746AT Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: EGF-like (InterPro:IPR006210); Has 259 Blast hits to 234 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 184; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr4:8462720-8464326 REVERSE LENGTH=212 SoyBaseE_val: 1.00E-60ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0031225GO-cc Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane SoyBaseN/AISS
UniRef100_B6SSP0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Neurogenic locus notch protein-like n=1 Tax=Zea mays RepID=B6SSP0_MAIZE SoyBaseE_val: 2.00E-33ISS
UniRef100_I1JB77UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JB77_SOYBN SoyBaseE_val: 1.00E-152ISS

Expression Patterns of Glyma02g00730
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g00730 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g004800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g00730
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g00730
>Glyma02g00730.1   sequence type=CDS   gene model=Glyma02g00730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTTTGCAAGTGTCGTAGCCATTGTCGCATTTCTTCTTCTACAACCTCTTTCAGCTACTTCTGACCTCCTTTCTCCTCTGCTTTCTCCCATCTTTGATGATGTATGCAAAGAAGTGGAATGTGGAAAAGGAACATGTAAACCTTCCAAGAACAGCACTTTCTTCTTTGAATGCGAGTGCCACCCGGGTTGGAAGAGAGCTCCTTCAAATGATAAGATGGGTTTGAAGTTTCTTCCTTGCATAGTTCCCAATTGTACATTGGACTACTCTTGCTCCAAAGCCCCTGCCCCTGTTCAAGAAAAGTCAACAAAATCCAATGAGTCGATTTTTGATGCTTGCCACTGGATTGATTGTGGTGGTGGCTCATGCAACAAGACATCCAAGTTCTCCTATAGTTGTGAGTGTGATGTAGGCTATGACAACCTCCTAAATGTCACTACCTTCCCTTGCTTCAGAGAATGTTCTCTTGGCTTGGGTTGCTCTGAACTTGGAATATCAGTGAAAAACTCATCTACTTCTGCACCACCGACTTTGAATGATAACAGCAAGAATGAAGGTAGCTCAATTCTACAAGGAAATTCCCTTCGGCTGGTCATGCTAATTATGTTCGTGGCAAAGCTCCATTTGCAAATAGGATAA
Predicted protein sequences of Glyma02g00730
>Glyma02g00730.1   sequence type=predicted peptide   gene model=Glyma02g00730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFASVVAIVAFLLLQPLSATSDLLSPLLSPIFDDVCKEVECGKGTCKPSKNSTFFFECECHPGWKRAPSNDKMGLKFLPCIVPNCTLDYSCSKAPAPVQEKSTKSNESIFDACHWIDCGGGSCNKTSKFSYSCECDVGYDNLLNVTTFPCFRECSLGLGCSELGISVKNSSTSAPPTLNDNSKNEGSSILQGNSLRLVMLIMFVAKLHLQIG*






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