SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G14750 | AT | Annotation by Michelle Graham. TAIR10: IQ-domain 19 | chr4:8470449-8471903 FORWARD LENGTH=387 | SoyBase | E_val: 2.00E-88 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005516 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calmodulin binding | SoyBase | N/A | ISS |
| PTHR13140 | Panther | MYOSIN | JGI | ISS | |
| PTHR13140:SF72 | Panther | MYOSIN-IX A, B | JGI | ISS | |
| PF00612 | PFAM | IQ calmodulin-binding motif | JGI | ISS | |
| UniRef100_B9RTL0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin binding protein, putative n=1 Tax=Ricinus communis RepID=B9RTL0_RICCO | SoyBase | E_val: 1.00E-154 | ISS |
| UniRef100_I1JB75 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JB75_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma02g00710 not represented in the dataset |
Glyma02g00710 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g004600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g00710.1 sequence type=CDS gene model=Glyma02g00710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGAGGACAGGGAAATGGCTTAGGAACTTGTTGACAGGGAAGAGATCAGACAGAGAGAAAGAGAAGGAAAAATGTGGTACCAACATGTGTTTGTTGAGTGGCACAAGCACACCAGTTTCAACAACAACAACAACCACCAAGGAGAAAAGAAGGTGGAGTTTCAGGAGATCATCAGCTTCTAGGGAACTCAATCTTGCAGAATTTGGTGTCACTGCTTCTTCAGTCACAGTGCAAAATGATCAAAATGCTGAGAATGATCAAAGGAAGCATGATCCTGATTCCAATGGATTGTCAACAAGATGTGTTGAAGAGGCTGCAGCCATTAAAATTCAATCGGTGTTTCGGTCCTACTTGGCAAGAAAGGCACTGTATGCTCTTAGAGGACTAGTGAAGTTGCAGGCACTAGTGAGGGGTCACTTGGTGAGAAAACAGGCCAGGGAGACACTGAGATGCATGCAGGCTTTAGTCATAGCACAATCCAGGGCTCGTGCTCAGAGGGCGCGAATGGTGTCAGACGGAAAACTTGATCAAAAGCTATCACCCAACAGAATAACCACAGAGGAAAACTTCTCCATGCATATGTATAATGAAATGCACAATGGTTTGGAGGAGAATGCCATGATAGTGGAGATGGCTGTTTGTGAATCCAAAGGTAACTCAAGAGGCAGAAACAGTTCTGTGAATCGTGAACCTTCTGATCATAGATTTTCTGCATATTATTCATCAAACGGTTCATACTCAAAGGAGGAAAACTACAATGCATCACCTGCACCATCAACACTGACAGAATTGAGTCCAAGAGCATGCAGTGGTCATTTTGAGGAGTGTTCCTTCAGCACAGCACAAAGTAGTCCCTATTACTACTCAGAAGTGTCAGGAGTGGATAATACAATTACAAAGGTTCCTTTTGCATTCCCTATACCAGCATACACAGAACCCATGTCCTATGACTACCCTTTATTTCCAAACTACATGGCCAACACAAAATCATCAAGGGCCAAAGCCAGATCACAGAGTGCACCAAAGTCAAGGCCGGATTCGTACGAGAGGCAACCGAGCCGACGAAGAGCTTCAATGGAAGGAAGAAATGTCCCAAAGCCAGTGAGGATGCAGAGGTCATCTTCACATGTTGGTGTCACTGCCCAAAACTACCAATATCCATGCTCAATAAAGCTTGACAGGTCCATAGTCAGTGAGTGTGGCTCCACAAGTACAGTGCTCACAAACACAAACTCTAATTACTGCACATGA
>Glyma02g00710.1 sequence type=predicted peptide gene model=Glyma02g00710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGRTGKWLRNLLTGKRSDREKEKEKCGTNMCLLSGTSTPVSTTTTTTKEKRRWSFRRSSASRELNLAEFGVTASSVTVQNDQNAENDQRKHDPDSNGLSTRCVEEAAAIKIQSVFRSYLARKALYALRGLVKLQALVRGHLVRKQARETLRCMQALVIAQSRARAQRARMVSDGKLDQKLSPNRITTEENFSMHMYNEMHNGLEENAMIVEMAVCESKGNSRGRNSSVNREPSDHRFSAYYSSNGSYSKEENYNASPAPSTLTELSPRACSGHFEECSFSTAQSSPYYYSEVSGVDNTITKVPFAFPIPAYTEPMSYDYPLFPNYMANTKSSRAKARSQSAPKSRPDSYERQPSRRRASMEGRNVPKPVRMQRSSSHVGVTAQNYQYPCSIKLDRSIVSECGSTSTVLTNTNSNYCT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
