SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G04190 | AT | Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:1106617-1108557 REVERSE LENGTH=328 | SoyBase | E_val: 0 | ISS |
| GO:0000085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0006606 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into nucleus | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0034968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone lysine methylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| KOG2449 | KOG | Methylmalonate semialdehyde dehydrogenase | JGI | ISS | |
| PTHR22904 | Panther | CHAPERONE BINDING PROTEIN | JGI | ISS | |
| PTHR22904:SF168 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00515 | PFAM | Tetratricopeptide repeat | JGI | ISS | |
| UniRef100_B9RTL2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Heat shock protein 70 (HSP70)-interacting protein, putative n=1 Tax=Ricinus communis RepID=B9RTL2_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_C6TJ63 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TJ63_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g00700 not represented in the dataset |
Glyma02g00700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g004400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g00700.1 sequence type=CDS gene model=Glyma02g00700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGAGACGAAAGAAGGTTCAGGTTCGGAGATGTCTCTGAAGGATCAGGGCAACGAGTTTTTCAAGTCAGGAAAGTATCTCAAAGCTGCTGCACTCTACACTCAAGCCATCAAGCTAGACCCTTCTAACCCTACCCTCTATAGTAATCGTGCTGCAGCACTACTGCAATTGGATAAGCTTAATAAAGCTCTAGATGATGCAGAGATGACAATCAAATTAAAACCCCAATGGGAAAAGGGATATTTCAGGAAGGGAAGCATATTGGAGGCTATGAAACGATATGATGATGCTTTAGCTTCCTTTCAGATAGCATTGCAGTATAACCCACAAAGTCAAGAAGTATCAAAAAAGATAAAGAAGATAAACCAACTGGTGAAAGATAGCAAGCGAGCTCAAGAAGTGGAGAATATGAGATCCAATGTTGACATGGCCAAACATTTAGATACATTCAAAACTGAAATGTCTGGGAAGTATGGGTCTGAAGAATGCTTGAAAGATTTGTTCTCATTCCTTGTTGAGACTATGGAGACTGCTGTAAAATCATGGCATGAAACTTCTTCAGTGGATGCTAAAGTTTACTTTCTTCTTGATAAGGAAAAGACAGACACCGATAAGTATGCCCCAGTTGTGAATATTGATAAGGCCTTTGAATCACCACATACACATGGCAACTGCTTTGCATTTCTTAGGCAGTATGCTGAGGAGTCTTTCTCCAAAGCAGCCTGCTTGGTGACTCCCAAAAACATCATTGCTTATCCGCAGGTCTGGAAGGGCCAAGGATCAAGAAAGTGGAAACATGCCCAGAGTGATGGTTTCTTTGTTCAATTTGAGTCACCTTCCCTGCGAAAGTTGTGGTTTATACCCAGTTCGAATGAAAAGGGACAGACCTGGTGCAGGGATCCAGAGGTTTTGGACATTGGTGCTCATGAAGTTCTTCCCCGGTTATTCAAAGAAAAGCAGCCCCGTTCTTAG
>Glyma02g00700.1 sequence type=predicted peptide gene model=Glyma02g00700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAETKEGSGSEMSLKDQGNEFFKSGKYLKAAALYTQAIKLDPSNPTLYSNRAAALLQLDKLNKALDDAEMTIKLKPQWEKGYFRKGSILEAMKRYDDALASFQIALQYNPQSQEVSKKIKKINQLVKDSKRAQEVENMRSNVDMAKHLDTFKTEMSGKYGSEECLKDLFSFLVETMETAVKSWHETSSVDAKVYFLLDKEKTDTDKYAPVVNIDKAFESPHTHGNCFAFLRQYAEESFSKAACLVTPKNIIAYPQVWKGQGSRKWKHAQSDGFFVQFESPSLRKLWFIPSSNEKGQTWCRDPEVLDIGAHEVLPRLFKEKQPRS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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