Glyma02g00650 - SoyBase

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Report for Sequence Feature Glyma02g00650

Feature Type:	gene_model
Chromosome:	Gm02
Start:	446695
stop:	450768
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g00650

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G14310	AT	Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein \| chr4:8237137-8240324 REVERSE LENGTH=893	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
UniRef100_F4JUQ1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transducin/WD40 domain-containing protein-like protein n=1 Tax=Arabidopsis thaliana RepID=F4JUQ1_ARATH	SoyBase	E_val: 0	ISS
UniRef100_UPI0002337379	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337379 related cluster n=1 Tax=unknown RepID=UPI0002337379	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g00650

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g00650 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g003800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g00650

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g00650

Limit To All Plant Sequences

>Glyma02g00650.1   sequence type=CDS   gene model=Glyma02g00650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACTCGCCGCCGCGGCGGCCACGATGCCGCCACCGTCCGTCCCCGTCCCCTCTCCGCCTCTCGCCGCTTCCCTTCTCCTTCTCTTTCTCTCCAGAAAGAAAACACCAACCCTCGCCGCTCCAATCCCAATCCCAACCACAAAACCCTCCCTCGCGGCCGCAGCTCCAGCCCCTCCCTCGACCGCCCCACCGCCCATAAGCCCACCAAGCCCACCACCACCGCCCCAAAGCCCAAACCTTCCACCTCCAGGTCAAGCCTCGAACTTAACAACAATCCCCCCAACGTAACCACCACCAACGACACCAAGTACTCCAGCAGGCTTCACGAGAAGCTCGCGTTTCTCGAAGGCAAAGTAAAGCGGATAGCTTCCGACATAAAGAAGACTAAAGAGATGCTTGACATGAACAACCCTGACGCCTCCAAGGTGATCCTCTCCGACATTCAGGACAAGATCTCAGGTATCGAGAAAGCCATTGTTCATGTCGTTTCTAACAAGGAAAGCGAAAATGGTGCGGTTAAAGTTGCTGCTAAAGACAAGAACTTAGCGAAAGAGTTGAAATTGAACACCGACGAACTCGAGGCAAGGTTGTTCCCTCACCAGAAACTGCTTCGGGACAGGACAGTGGTTAAGGATAAGGATAAGGACTCTGTGGTGGAGGCACAGAAGGTGCTGAGTCCGGTCGACGATAACTTGGTTGCAGTCGAGTTTTTGGCTCTGATCGGTAAAGAGAAAGACAAGGTGAATGCTGGGGAGGATGTGAAGGAAAGTGGTGGTGGGAATGGGCGCTGGAATGATAAGAGGAACAATGACATTGACGCGCTGCTCGGGGCGGATGAGAAGCTTGAGGATTTCGATGATGATCAGGAGAATAAGGAGAACAAGGAAGGTGTGGTTGTTGAGGAAGAGATGGATGAGGCTTTTAATTTTAGGCTGAATGGGATTGGTAGCAATGTTGCTACTGGTGGGTGGTTCGTGAACGAAGGCGAGGCTGTCCTCCTTGCTCACCATGATGGTTCTTGTACTTATTATGATATTACCAATAGTGAGGAAAAAGCTGTATATATGCCACCCTCAGAAGTTTCACCCAACACATGGAGAGATTGTTGGGTAATTCGTGCCCCTGGTTCTGATGGTTGCTCTGGAAGGTTTGTAGTAGCTGCATCTGCTGGCAATACTATGGACTCAGGATTTTGCTCATGGGACTTTTACACCAAAGAAGTGCGTGCTATGCAAGTTGATGCTGGAACAGCCTCCTCAAGAATTGCACTTAGACCGTTACCAAACAACATTAGAAGAAATTCTACATCTAGCACTGTTACAGTAGAAGCTACGCAGTGGTGGTATAGGCCCTGTGGACCTCTCATCGTCTCTACCACCAGCTCACAGAGAGCTGTGAAAGTTTTTGATGTTCGCGATGGAGAGCAAATCATGAAATGGGATGTTCAGAAGCCTGTTTTAGCAATGGATTATTGCAGCCCTTTGCAATGGAGGAACAGAGGGAAAGTAGTGGTAGCTGAAGCTGAATCCATTTCTTTGTGGGATGTGAACTCACTTACAGCTCAAGCTCTGCTCTCTGTTCCTACAGGCGGTAAAAAAGTTTCGGCTCTCCATGTGAGCAACACGGATGCAGAATTGGGTGGAGGGGTTCGCAAAAGAGTAAGTTCATCTGAGGCTGAAGGAAATGATGGTGTGTTCTGCACCTCAGATTCTATCAATGTCTTGGACTTTCGCCAGCCATCTGGTGTAGGCCTTAAGATATCAAAGCATGGTGTCAATGTGCAATCAGTTTTCTCTCGCGGGGATTCTGTCTTCCTTGGTTGTTCCAGCACAAGTTCAATGGGCAAGAAGCAGACCTCACTGCTGCAACAGTTTTCGCTGCGCAGACAAGGACTGTTCACCACCTATGCTCTTCCAGAATCGAATTCACACTCACACCATGCAGCAATCTCCCAAGTTTGGGGTAATTCTGACTTTGTCATGGGTGTTTGTGGCCTAGGACTGTTTGTGTTTGATGCAGTGAAAGATGATGCACTAAGGGTTCTCAACATGGACTACTCCAGTGATCAAAGTTTTAGAGAAGTAATTGGTCCAGATGACATGTATTGTCCTTCCTTTGATTATCTTGGATCTCGAGCTCTTCTGATATCAAGAGATCGACCTGCTATGTGGAGGCATCTAATAGTTTGA

Predicted protein sequences of Glyma02g00650

Limit To All Plant Sequences

>Glyma02g00650.1   sequence type=predicted peptide   gene model=Glyma02g00650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATRRRGGHDAATVRPRPLSASRRFPSPSLSLQKENTNPRRSNPNPNHKTLPRGRSSSPSLDRPTAHKPTKPTTTAPKPKPSTSRSSLELNNNPPNVTTTNDTKYSSRLHEKLAFLEGKVKRIASDIKKTKEMLDMNNPDASKVILSDIQDKISGIEKAIVHVVSNKESENGAVKVAAKDKNLAKELKLNTDELEARLFPHQKLLRDRTVVKDKDKDSVVEAQKVLSPVDDNLVAVEFLALIGKEKDKVNAGEDVKESGGGNGRWNDKRNNDIDALLGADEKLEDFDDDQENKENKEGVVVEEEMDEAFNFRLNGIGSNVATGGWFVNEGEAVLLAHHDGSCTYYDITNSEEKAVYMPPSEVSPNTWRDCWVIRAPGSDGCSGRFVVAASAGNTMDSGFCSWDFYTKEVRAMQVDAGTASSRIALRPLPNNIRRNSTSSTVTVEATQWWYRPCGPLIVSTTSSQRAVKVFDVRDGEQIMKWDVQKPVLAMDYCSPLQWRNRGKVVVAEAESISLWDVNSLTAQALLSVPTGGKKVSALHVSNTDAELGGGVRKRVSSSEAEGNDGVFCTSDSINVLDFRQPSGVGLKISKHGVNVQSVFSRGDSVFLGCSSTSSMGKKQTSLLQQFSLRRQGLFTTYALPESNSHSHHAAISQVWGNSDFVMGVCGLGLFVFDAVKDDALRVLNMDYSSDQSFREVIGPDDMYCPSFDYLGSRALLISRDRPAMWRHLIV*

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