Glyma02g00640 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma02g00640

Feature Type:	gene_model
Chromosome:	Gm02
Start:	431821
stop:	445394
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g00640

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G23430	AT	Annotation by Michelle Graham. TAIR10: phosphate 1 \| chr3:8387818-8393242 REVERSE LENGTH=782	SoyBase	E_val: 0	ISS
GO:0000041	GO-bp	Annotation by Michelle Graham. GO Biological Process: transition metal ion transport	SoyBase	N/A	ISS
GO:0006817	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphate ion transport	SoyBase	N/A	ISS
GO:0006826	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron ion transport	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009805	GO-bp	Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process	SoyBase	N/A	ISS
GO:0010106	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation	SoyBase	N/A	ISS
GO:0010167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nitrate	SoyBase	N/A	ISS
GO:0015698	GO-bp	Annotation by Michelle Graham. GO Biological Process: inorganic anion transport	SoyBase	N/A	ISS
GO:0015706	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitrate transport	SoyBase	N/A	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0015114	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphate ion transmembrane transporter activity	SoyBase	N/A	ISS
KOG1162	KOG	Predicted small molecule transporter	JGI		ISS
PTHR10783	Panther	XENOTROPIC AND POLYTROPIC MURINE LEUKEMIA VIRUS RECEPTOR	JGI		ISS
PTHR10783:SF4	Panther	XENOTROPIC AND POLYTROPIC MURINE LEUKEMIA VIRUS RECEPTOR XPR1	JGI		ISS
PF03105	PFAM	SPX domain	JGI		ISS
PF03124	PFAM	EXS family	JGI		ISS
UniRef100_G7IJI7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pho1-like protein n=1 Tax=Medicago truncatula RepID=G7IJI7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JB68	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JB68_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g00640

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g00640 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g003700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g00640

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g00640

Limit To All Plant Sequences

>Glyma02g00640.1   sequence type=CDS   gene model=Glyma02g00640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAAATTCTCAAAGGAGCTCGAAGCTCAACTAATACCAGAATGGAAGGAGGCCTTTGTTAACTACAGGCAGCTCAAGAAACACATAAAGAGGATCAAACTCAATAGAGTTTCGAAGCAATTACAAGCCCCAGAAGAGACCTTTGGTCGCTCCGTTTTCGATTCCTTTCGCTTCATAACCAACAAGTTCTGCAATTCAGACAACAATCATAAACAAGACATGATCCAGGTGAGGAGAAAAACAACGGAAGAGAGTGAAGAAGTGTATGAAACTGAGCTGGCACAATTGTTTTCAGAAGAGGATGAAGTGCAAGTGTTTTTTGCAAAGCTGGATGGAGAGCTTAACAAGATAAACCAATTCTACAAGAAGCAAGAGACTGAGTTCATTGAGAGAGGAGAAATGCTGAGCAAGCAGCTTAACATCTTGCTAGACCTTAAGCAAATTCTCAGCGACCGACACAAGAAAAATCCGTCGCTAAAGCCTTCTAATACTGGAGTTTTTCCTCATCCTCCAGGCCAAGAAAGTATTGGCGAATCAATTCATGATAATTCAGAAGTTTCACAAATGGATGAAGTAATCTCAACGTTGGAAAGAAATGGTCTAAGTTTTGCGAATTCGGCAATGAGGGTAAAGACAAAGAAGAAGGGAAAGCCTCATATGGCCTTAAGAATTGATATTCCAGCCACCACTCCTACGGCTGTTACTTCCATGTTGTGGGAGGATTTGGTGAACAGTCCAATTAAACCAGAGTATGGTGGAGAGTTCATTAACAAGAGAAAAATTCAGTGTGCTGAGAAGATGATTAGAAGTGCATTTGTAGAGCTCTATAAAGGTCTTGGCCTTCTCAAAACTTACAGCTCATTGAATATGGTAGCATTCACAAAGATACTCAAGAAATTTGACAAGGTGTCTAATCAAAAGGCTTCTGCAAATTATATGAAAGAAGTGAAGAGATCCCATTTCATTAGTTCTGACAAGGTTGTTAGACTAATGGACGAAGTGGAATCCATATTCACAAAGCACTTTGCCAACAATGATAGGAAAAGAGCAATGAAGTTTTTAAGACCCCAACAGCCAAAAGTTTCTCATACGGTCACCTTCCTTGTCGGGTTGTGTACAGGTTGTTCTGTATCCTTGTTTTGTGTATACGTAATCTTGGCGCATATGTGTGGTATATTCTCTCCTAGTACAGAACCAGCTTATATGGACGCTGTCTACCCAGTTTCCAGTGTGTTTGCATTATTAAGCCTGCACTTGTTTATGTATGGATGCAACCTGTACATGTGGAAGAGTACAAGAATCAACCATAATTTCATATTTGAATTCTCACCAAGCACAACACTGAAGCACAGAGATGCATTTCTGATGTGCACTACCCTCATGACAACTGTGTTTGGGGCAATGGTGGTACACCTGCTACTAAGGGCTGGAGGTTTTTCTCCTGGCCAAGTTGATGCCATTCCTGGAATCATTTTTTTGTTCTTTGTAGGTCTTCTCATTTGCCCATTTGACATTTTTTATCGCCCTACTCGTTTTTGCTTCATCCGGGTTATTCGTAACATAGTTTGCTCTCCATTTTATAAGGTTCTGCTGGTAGACTTTTTTATGGCTGACCAACTAACTAGCCAGATTCCATTGCTAAGGCATTTGGAAACAACAGGTTGTCACATTTTTGCTAGAGTTTTCAAGTCACACCACCCTGAGGCATGCCATTCTGGAAGGCTATACATAGAAATAACTTACCTTATCTCATTTTTGCCATATTGGTGGCGTGCATTACAGTGTGCAAGAAGGTGGTTTGATGACCGTGATGTCAACCATTTGGCTAACATGGGGAAGTATGTGTCAGCAATGGTTGCAGCAGGAGCTAGAGTCACATATAGCAGGCAAGATAGCCATCTATGGTTTGCTATAGTCTTGATCACTTCTGTGGTGGCCACATTTTACCAATTGTATTGGGATTTTTTCAAGGACTGGGGGTTTTTCAATCCCAAATCCAAAAATCCTTGTCTCAGAGATGATCTAATTCTAAAGAATAAATGCATATACTACATGTCTATTGCATTGAATGTTGTCCTAAGAGTGGCTTGGGTGGAGACTATAATGCACCTCAAAGTGGGGCCTGTTCAAACTAGGCTACTAGACTTTTTGTTGGCTTCACTAGAGGTTATTCGACGAGGGCATTGGAATTTCTACAGGTTGGAGAATGAGCATCTAAACAACGTGGGTCATTTCCGGGCAGTGAAGGCAGTTCCACTACCATTTCGTGACATAGACTCAGACAGCTGA

Predicted protein sequences of Glyma02g00640

Limit To All Plant Sequences

>Glyma02g00640.1   sequence type=predicted peptide   gene model=Glyma02g00640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKFSKELEAQLIPEWKEAFVNYRQLKKHIKRIKLNRVSKQLQAPEETFGRSVFDSFRFITNKFCNSDNNHKQDMIQVRRKTTEESEEVYETELAQLFSEEDEVQVFFAKLDGELNKINQFYKKQETEFIERGEMLSKQLNILLDLKQILSDRHKKNPSLKPSNTGVFPHPPGQESIGESIHDNSEVSQMDEVISTLERNGLSFANSAMRVKTKKKGKPHMALRIDIPATTPTAVTSMLWEDLVNSPIKPEYGGEFINKRKIQCAEKMIRSAFVELYKGLGLLKTYSSLNMVAFTKILKKFDKVSNQKASANYMKEVKRSHFISSDKVVRLMDEVESIFTKHFANNDRKRAMKFLRPQQPKVSHTVTFLVGLCTGCSVSLFCVYVILAHMCGIFSPSTEPAYMDAVYPVSSVFALLSLHLFMYGCNLYMWKSTRINHNFIFEFSPSTTLKHRDAFLMCTTLMTTVFGAMVVHLLLRAGGFSPGQVDAIPGIIFLFFVGLLICPFDIFYRPTRFCFIRVIRNIVCSPFYKVLLVDFFMADQLTSQIPLLRHLETTGCHIFARVFKSHHPEACHSGRLYIEITYLISFLPYWWRALQCARRWFDDRDVNHLANMGKYVSAMVAAGARVTYSRQDSHLWFAIVLITSVVATFYQLYWDFFKDWGFFNPKSKNPCLRDDLILKNKCIYYMSIALNVVLRVAWVETIMHLKVGPVQTRLLDFLLASLEVIRRGHWNFYRLENEHLNNVGHFRAVKAVPLPFRDIDSDS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain