Glyma02g00625 - SoyBase

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Report for Sequence Feature Glyma02g00625

Feature Type:	gene_model
Chromosome:	Gm02
Start:	406023
stop:	412046
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g00625

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G33440	AT	Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein \| chr2:14171619-14173226 FORWARD LENGTH=322	SoyBase	E_val: 3.00E-45	ISS
GO:0000956	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
PTHR23139	Panther	RNA-BINDING PROTEIN	JGI		ISS
PTHR23139:SF9	Panther	SPLICING FACTOR U2AF LARGE SUBUNIT	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_B9SS44	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Splicing factor u2af large subunit, putative n=1 Tax=Ricinus communis RepID=B9SS44_RICCO	SoyBase	E_val: 1.00E-46	ISS
UniRef100_UPI000233C21A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C21A related cluster n=1 Tax=unknown RepID=UPI000233C21A	SoyBase	E_val: 1.00E-152	ISS

Expression Patterns of Glyma02g00625

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g00625 not represented in the dataset	Glyma02g00625 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g00625 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g003600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g00625

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g00625

Limit To All Plant Sequences

>Glyma02g00625.2   sequence type=transcript   gene model=Glyma02g00625   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTATCTTTTAATAGTTTTCTTATCTTTTGTACAATAGAAGTATTTATGATTTTTTACCTGCCTGTGTACCAACCTGAGCAAATCCCAAGTGGCTCAAGGGTCCATTTGTAAATACTTCTTTTTGTGTTTTTCATTTGTAAATATTTCTTGCCCCCCTCAACTTTGTCCATTTATATTTTCTAAAATCCTCCATCTGTGTACTTTTCATCAATGTTTTTACAAATTCAGTCTCTGTTCAGCTCCAAGTGCAAAGAAAAGAAGAAATATTTTTTTCTCCTGCTAGGGTGTGGGGATGGGATGTTGCCTGGGAGTAAGAAAATCTTCTTCAACAGCTAAGACTGTCATTTGTGTGCCTTTTGAAGCTTCTTTTGTTTTCTTTAGTTAAGTGACACTGTCATTTTAAGATGATGATTCAAGCATCCTTTTTCTGACTTCTGAGCCAATTGAATGGTCTTAGAAAACTCAAATCAGTAATTGGACCATTCCTTGTAATTCCAGCAGACAAACAAAATCATCAAAATTAACCTAATTAAACTGCTGCCTTGGGGTTGGTTTATCATAGGTGCACACAATTTTATACGTACAACTTTGTCACATCCTGGAAAAAGTACTTACTGAGCCATTCTCTTTAGGGCTTTTGGCAGGATAAACCCATTATGTGCTAGCGATTTGACTCCTTTAAAGTGGGGTGCGCTATGAAGGGAAACATGCTGAGTTATATCCTTCGATCCAAAAATCAAGTTATTAGAGTTTAATAATAACTCAACACCTTTTCGTTTAAAGTGCATCCTTAGTTTAGAAGAGTCAAATTCAAGTTAATATGATGGGTTGGTTGTTGGATTTAGTATTTATGAATTTTGGCATATTATGGTTTCCTCTTATCTATATGAGCTCTTGCAAAAGCTGTTATTTTTTCTTTAGTATCTTTTTCTATTCTAAGATGGAAAAAAAATCTAAAAGCATGTGTACTATTATTTGCTTTTGTTATCTCTCTCCTGTTGTAATCTCTTTTTTGTTTTATTGAACACTGATTTGAGCCATCTGTTAAGTATGTGGACCACTCTGTTACCATCAAAGCTTGTGCGGGTTTGAATGGTATGAAGCTGGGAGGGGAAGTACTAACAGTTCTTCAGGCTATGCCTGATGCATCACCCTCGGAAAATGCTGGTGAGCCACCGTCATATGGGATTCCAGAGCATGCAGAACCACTGCTCAGAAAGCCAACGCAAGTACTAGAGATTAATAATGTGTTTGCAGACTCTATTTGGTCTTTATCTGATGTGACAATTGAAGAAATTTTGGATGATGTCCGATTGGAATGTGCAAGATTTGGGACTATTAAATCAATTAATGTAGTCAAGCATAGCAGTGACGAGAATTTAGCAACCAAATTAGAAGAATGTGAAGTCATAAACAAAGTGGATGCTAAAGATGTTTCTCAAGACACAAACTGTATTACTAATAATACAGAATATAGTTTTTCTGACAAGGCTAATTACTCCAAATTTAAAGGAACAAATGGGATGGAAATCCATGATAACAAAGAAATGGAAGAAGATAAAGTTGATGAGGGTAGCAGTGTTAATGTTGATAAAAGTGCTGAAGTTTTTGATGATAAATCATGTAGAGAACACCTTGTAGATGATACAGCAGTTGAAGATGCAGAGGATAAGAACATACCTTGTAGTATCATTCAAGAATGTCTGGGTCAACAGGATACTCTCGATGATGGGCCAGAATTTCTTGATATGATGGTTGCTAACTGATATTGATGTGGATATTGAAAATAATATGGAATCTAAAGACAGTTTCTGCATTTCAGGAAGGCTTTGCTGAATGGGATACCAGTGCAGAATTGGTTGGTCCCCAAAAGAGCATTGACACGGAAGATGATATTTATGGTCATGTATTTACACCTGGTTCTGTCCTTGTTGAGTATGGAAGAGCTGAAGCATGTTGTTCGGAAGCACATTGTTTGCATGGACGATTCTTTGATGGCAGAATGGTGACGGTGGAATATGTTGCTCTCAGTCTATACAGAACAAGATTTACAACATGACCATTTCAATGTAAGTAGCAACTCTTGATGAAGCATCAAATTGTATTTTTGCATGATTGTGGAAGAATCGATTAATCAATCTGATTGGTTATGCCAGCCTGCTTCCTGGACAGTTTTTTAACTTTCAGATTTACATGTTTAGTATTTTAACATTTGGAGTGGGTAAAAGCTTAACCGAGCAATGTCGATTTGAGGAAAATGCAGTATAGCATACATCAAGTTTGTAACTGCAGACTATCTGATGATTTGTTTTGCAAATCGGGCATATGATGGAAATTTATTATTTCGTACGCTTAAATGTGGTTAGATTTCGAGCTGGTGGTCTCATGCTATTTGGCAATATTCTGTGTACATGGTTATGTTGCAATGTAAACTGATTCTTGTATCGTAGTTATTTTTAGATGTTGGTTACAGGGCCATACTTTTCCTAGTAGTATTTTTTTTAACATATATTAATCATGAATCACCATAAGTCCGTAACCTTTTACA

>Glyma02g00625.3   sequence type=transcript   gene model=Glyma02g00625   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCAACTTTGTCCATTTATATTTTCTAAAATCCTCCATCTGTGTACTTTTCATCAATGTTTTTACAAATTCAGTCTCTGTTCAGCTCCAAGTGCAAAGAAAAGAAGAAATATTTTTTTCTCCTGCTAGGGTGTGGGGATGGGATGTTGCCTGGGAGTAAGAAAATCTTCTTCAACAGCTAAGACTGTCATTTGTGTGCCTTTTGAAGCTTCTTTTGTTTTCTTTAGTTAAGTGACACTGTCATTTTAAGATGATGATTCAAGCATCCTTTTTCTGACTTCTGAGCCAATTGAATGGTCTTAGAAAACTCAAATCAGTAATTGGACCATTCCTTGTAATTCCAGCAGACAAACAAAATCATCAAAATTAACCTAATTAAACTGCTGCCTTGGGGTTGGTTTATCATAGGTGCACACAATTTTATACGTACAACTTTGTCACATCCTGGAAAAAGTACTTACTGAGCCATTCTCTTTAGGGCTTTTGGCAGGATAAACCCATTATGTGCTAGCGATTTGACTCCTTTAAAGTGGGGTGCGCTATGAAGGGAAACATGCTGAGTTATATCCTTCGATCCAAAAATCAAGTTATTAGAGTTTAATAATAACTCAACACCTTTTCGTTTAAAGTGCATCCTTAGTTTAGAAGAGTCAAATTCAAGTTAATATGATGGGTTGGTTGTTGGATTTAGTATTTATGAATTTTGGCATATTATGGTTTCCTCTTATCTATATGAGCTCTTGCAAAAGCTGTTATTTTTTCTTTAGTATCTTTTTCTATTCTAAGATGGAAAAAAAATCTAAAAGCATGTGTACTATTATTTGCTTTTGTTATCTCTCTCCTGTTGTAATCTCTTTTTTGTTTTATTGAACACTGATTTGAGCCATCTGTTAAGTATGTGGACCACTCTGTTACCATCAAAGCTTGTGCGGGTTTGAATGGTATGAAGCTGGGAGGGGAAGTACTAACAGTTCTTCAGGCTATGCCTGATGCATCACCCTCGGAAAATGCTGGTGAGCCACCGTCATATGGGATTCCAGAGCATGCAGAACCACTGCTCAGAAAGCCAACGCAAGTACTAGAGATTAATAATGTGTTTGCAGACTCTATTTGGTCTTTATCTGATGTGACAATTGAAGAAATTTTGGATGATGTCCGATTGGAATGTGCAAGATTTGGGACTATTAAATCAATTAATGTAGTCAAGCATAGCAGTGACGAGAATTTAGCAACCAAATTAGAAGAATGTGAAGTCATAAACAAAGTGGATGCTAAAGATGTTTCTCAAGACACAAACTGTATTACTAATAATACAGAATATAGTTTTTCTGACAAGGCTAATTACTCCAAATTTAAAGGAACAAATGGGATGGAAATCCATGATAACAAAGAAATGGAAGAAGATAAAGTTGATGAGGGTAGCAGTGTTAATGTTGATAAAAGTGCTGAAGTTTTTGATGATAAATCATGTAGAGAACACCTTGTAGATGATACAGCAGTTGAAGATGCAGAGGATAAGAACATACCTTGTAGTATCATTCAAGAATGTCTGGGTCAACAGGATACTCTCGATGATGGGCCAGAATTTCTTGATATGATGGTTGCTAACTGATATTGATGTGGATATTGAAAATAATATGGAATCTAAAGACAGTTTCTGCATTTCAGGAAGGCTTTGCTGAATGGGATACCAGTGCAGAATTGGTTGGTCCCCAAAAGAGCATTGACACGGAAGATGATATTTATGGTCATGTATTTACACCTGGTTCTGTCCTTGTTGAGTATGGAAGAGCTGAAGCATGTTGTTCGGAAGCACATTGTTTGCATGGACGATTCTTTGATGGCAGAATGGTGACGGTGGAATATGTTGCTCTCAGTCTATACAGAACAAGATTTACAACATGACCATTTCAATTATTTTAACATTTGGAGTGGGTAAAAGCTTAACCGAGCAATGTCGATTTGAGGAAAATGCAGTATAGCATACATCAAGTTTGTAACTGCAGACTATCTGATGATTTGTTTTGCAAATCGGGCATATGATGGAAATTTATTATTTCGTACGCTTAAATGTGGTTAGATTTCGAGCTGGTGGTCTCATGCTATTTGGCAATATTCTGTGTACATGGTTATGTTGCAATGTAAACTGATTCTTGTATCGTAGTTATTTTTAGATGTTGGTTACAGGGCCATACTTTTCCTAGTAGTATTTTTTTTAACATATATTAATCATGAATCACCATAAGTCCGTAACCTTTTACA

Coding sequences of Glyma02g00625

Limit To All Plant Sequences

>Glyma02g00625.1   sequence type=CDS   gene model=Glyma02g00625   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTCAAGTGGTCACCATCATCGACATGGAGGCTCTACAAGTGGACTTGATCAGTGGTGCTGTCACAATAAATGATGTCGTAATTGATTCACCTCATAAGATCTTCATTGGTGGAATTTCAAATCATCTTTCTTCAGAGATGCTTGTGGAGATTGCTGGTTCGTTTGGATCTTTGAAGGCTTACCACTTTGAAACCAAGGTCAGCAATGGATCATGTGCTTTTCTTGAGTATGTGGACCACTCTGTTACCATCAAAGCTTGTGCGGGTTTGAATGGTATGAAGCTGGGAGGGGAAGTACTAACAGTTCTTCAGGCTATGCCTGATGCATCACCCTCGGAAAATGCTGGTGAGCCACCGTCATATGGGATTCCAGAGCATGCAGAACCACTGCTCAGAAAGCCAACGCAAGTACTAGAGATTAATAATGTGTTTGCAGACTCTATTTGGTCTTTATCTGATGTGACAATTGAAGAAATTTTGGATGATGTCCGATTGGAATGTGCAAGATTTGGGACTATTAAATCAATTAATGTAGTCAAGCATAGCAGTGACGAGAATTTAGCAACCAAATTAGAAGAATGTGAAGTCATAAACAAAGTGGATGCTAAAGATGTTTCTCAAGACACAAACTGTATTACTAATAATACAGAATATAGTTTTTCTGACAAGGCTAATTACTCCAAATTTAAAGGAACAAATGGGATGGAAATCCATGATAACAAAGAAATGGAAGAAGATAAAGTTGATGAGGGTAGCAGTGTTAATGTTGATAAAAGTGCTGAAGTTTTTGATGATAAATCATGTAGAGAACACCTTGTAGATGATACAGCAGTTGAAGATGCAGAGGATAAGAACATACCTTGTAGTATCATTCAAGAATGTCTGGGTCAACAGGATACTCTCGATGATGGGCCAGAATTTCTTGATATGATGGTTGCTAACTGA

>Glyma02g00625.2   sequence type=CDS   gene model=Glyma02g00625   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCTGGGAGGGGAAGTACTAACAGTTCTTCAGGCTATGCCTGATGCATCACCCTCGGAAAATGCTGGTGAGCCACCGTCATATGGGATTCCAGAGCATGCAGAACCACTGCTCAGAAAGCCAACGCAAGTACTAGAGATTAATAATGTGTTTGCAGACTCTATTTGGTCTTTATCTGATGTGACAATTGAAGAAATTTTGGATGATGTCCGATTGGAATGTGCAAGATTTGGGACTATTAAATCAATTAATGTAGTCAAGCATAGCAGTGACGAGAATTTAGCAACCAAATTAGAAGAATGTGAAGTCATAAACAAAGTGGATGCTAAAGATGTTTCTCAAGACACAAACTGTATTACTAATAATACAGAATATAGTTTTTCTGACAAGGCTAATTACTCCAAATTTAAAGGAACAAATGGGATGGAAATCCATGATAACAAAGAAATGGAAGAAGATAAAGTTGATGAGGGTAGCAGTGTTAATGTTGATAAAAGTGCTGAAGTTTTTGATGATAAATCATGTAGAGAACACCTTGTAGATGATACAGCAGTTGAAGATGCAGAGGATAAGAACATACCTTGTAGTATCATTCAAGAATGTCTGGGTCAACAGGATACTCTCGATGATGGGCCAGAATTTCTTGATATGATGGTTGCTAACTGA

>Glyma02g00625.3   sequence type=CDS   gene model=Glyma02g00625   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCTGGGAGGGGAAGTACTAACAGTTCTTCAGGCTATGCCTGATGCATCACCCTCGGAAAATGCTGGTGAGCCACCGTCATATGGGATTCCAGAGCATGCAGAACCACTGCTCAGAAAGCCAACGCAAGTACTAGAGATTAATAATGTGTTTGCAGACTCTATTTGGTCTTTATCTGATGTGACAATTGAAGAAATTTTGGATGATGTCCGATTGGAATGTGCAAGATTTGGGACTATTAAATCAATTAATGTAGTCAAGCATAGCAGTGACGAGAATTTAGCAACCAAATTAGAAGAATGTGAAGTCATAAACAAAGTGGATGCTAAAGATGTTTCTCAAGACACAAACTGTATTACTAATAATACAGAATATAGTTTTTCTGACAAGGCTAATTACTCCAAATTTAAAGGAACAAATGGGATGGAAATCCATGATAACAAAGAAATGGAAGAAGATAAAGTTGATGAGGGTAGCAGTGTTAATGTTGATAAAAGTGCTGAAGTTTTTGATGATAAATCATGTAGAGAACACCTTGTAGATGATACAGCAGTTGAAGATGCAGAGGATAAGAACATACCTTGTAGTATCATTCAAGAATGTCTGGGTCAACAGGATACTCTCGATGATGGGCCAGAATTTCTTGATATGATGGTTGCTAACTGA

Predicted protein sequences of Glyma02g00625

Limit To All Plant Sequences

>Glyma02g00625.1   sequence type=predicted peptide   gene model=Glyma02g00625   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVQVVTIIDMEALQVDLISGAVTINDVVIDSPHKIFIGGISNHLSSEMLVEIAGSFGSLKAYHFETKVSNGSCAFLEYVDHSVTIKACAGLNGMKLGGEVLTVLQAMPDASPSENAGEPPSYGIPEHAEPLLRKPTQVLEINNVFADSIWSLSDVTIEEILDDVRLECARFGTIKSINVVKHSSDENLATKLEECEVINKVDAKDVSQDTNCITNNTEYSFSDKANYSKFKGTNGMEIHDNKEMEEDKVDEGSSVNVDKSAEVFDDKSCREHLVDDTAVEDAEDKNIPCSIIQECLGQQDTLDDGPEFLDMMVAN*

>Glyma02g00625.2   sequence type=predicted peptide   gene model=Glyma02g00625   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKLGGEVLTVLQAMPDASPSENAGEPPSYGIPEHAEPLLRKPTQVLEINNVFADSIWSLSDVTIEEILDDVRLECARFGTIKSINVVKHSSDENLATKLEECEVINKVDAKDVSQDTNCITNNTEYSFSDKANYSKFKGTNGMEIHDNKEMEEDKVDEGSSVNVDKSAEVFDDKSCREHLVDDTAVEDAEDKNIPCSIIQECLGQQDTLDDGPEFLDMMVAN*

>Glyma02g00625.3   sequence type=predicted peptide   gene model=Glyma02g00625   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKLGGEVLTVLQAMPDASPSENAGEPPSYGIPEHAEPLLRKPTQVLEINNVFADSIWSLSDVTIEEILDDVRLECARFGTIKSINVVKHSSDENLATKLEECEVINKVDAKDVSQDTNCITNNTEYSFSDKANYSKFKGTNGMEIHDNKEMEEDKVDEGSSVNVDKSAEVFDDKSCREHLVDDTAVEDAEDKNIPCSIIQECLGQQDTLDDGPEFLDMMVAN*

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