SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G25440 | AT | Annotation by Michelle Graham. TAIR10: RNA-binding CRS1 / YhbY (CRM) domain protein | chr3:9224294-9225505 FORWARD LENGTH=380 | SoyBase | E_val: 1.00E-142 | ISS |
| GO:0042761 | GO-bp | Annotation by Michelle Graham. GO Biological Process: very long-chain fatty acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0050291 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sphingosine N-acyltransferase activity | SoyBase | N/A | ISS |
| PF01985 | PFAM | CRS1 / YhbY (CRM) domain | JGI | ISS | |
| UniRef100_G7I7W0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: CRM domain-containing protein, putative n=1 Tax=Medicago truncatula RepID=G7I7W0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JB66 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JB66_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g00610 not represented in the dataset |
Glyma02g00610 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g003500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g00610.2 sequence type=transcript gene model=Glyma02g00610 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTTATTTAGTTCATTTGAAAATGGTAGTGAGAAACCTGCACCTTATGATTCTTATTTCTATGTTATGTTTGATACTAATCAAGATCTTTATATTACAATGTATAAACAAATTGGTGGAATTTGACATTATTAAGTTAAAAAGACTAGATTTAAATCCCAGCCGTTGATTTGTTTTTAAAAAGGAGATTTGGTAGGGTTTAAGCATTGCGGCTTCAATTTTATCTATATCGCATTGGTAGGAAGCAAATCAGAGAGTTTGATTGAGAAGTATGGTGTGGAAGCTTTTGGGAGCACGCCTTCTCTCCTCATATTCTTCTTCTTTGCTTCTCACACCCCTCTTATTTCGCAGCAAAATAAGCTTGGTTCGTGGCCAGGAACCTATTTTTGGGCACCTCTGTTACATGAAACCATCTCCTTTCTTGGGGAACGCAAGCTTTCATTCATGTCCATTTCTAAAGTTTAACGATAAGGTTGTAGAGCAACAACAGGATTCTCAAAAGGCCTCAAGTGCTAATGTTGATGGTGATGGTAATGCCAAAGTAAAGAGGAACAAATTAAAGGGGAAAAGAGCTGTTGTAAGATGGCTCAAGTTCTTTAGATTTAAGAAGAAGAAAGAGTATGAAAGGATGACAGCAGAGGAAAAAATTTTATACAAATTGTTAAAGGCTCGAAAAAAAGAAGAGAGACTTTGTGAAGCTCTGAAAAAGATTGAGCCTGCAGAATCTTCAGAAACAACCCATGATCCTGAGATATTAACCCCAGAAGAGCACTTTTTCTTCTTAAAGATGGGTCTCAAAAGCAAAAATTACGTGCCAGTTGGAAGACGAGGAATTTACCAAGGTGTAATTTTGAACATGCATCTGCATTGGAAAAAACATCAAACTTTGAAAGTGGTGGTGAAGACATTTTCAGCAGAGGAGGTTAAGGAGATTGCTACTGAACTGGCAAGATTGAGCGGAGGTATAGTGCTTGACATTCATGAAGATAACACAATAATAATGTACAGAGGGAAAAACTACTCTCAACCACCAACAGAGATCATGTCTCCACGAGTCTCTCTTTCAAGAAAGAAGGCATTGGATAAATCCAAATACAGGGATGCCCTCCGAGCTGTGAGGAGACATATTCCAAGGCTTGAACAAGAGCTTGAAATTCTTCGTGCTCAATTTAAAAGTTCAGCTGAAAGTAATACAGATGCTGCTGAGGCAATCCAGAACAGTGGCATAGAAAGTATTGAGTCTGGGAGTATCTCAAATTTCCAGCTACAGAATTCATATAAAGACCGTGAAAGGATGAATGATAACATTGGGTGCACAGAGGATGAGACAGATATGAACTCTGAATTGGATTCTGATTCGGATAAGTTATCAGATATATTTGAGACTGATTCAGATACTGAGAATTTCATAAAGGAGGAGAAACCTCTTTACTTGGATGAGTTTGATAATTTTCCAGAGCAAAGCGATGGAGAAATGAATGATTTTGAGGAGCATCTGCGACAAATGTCTCTGAAATCAAAAAACATGGAAAAGGAAGATAACTTACCTAAGTTGGACGAAGTTGACAAGATTTTTCTGCAAGCTACTTCCTTTTTAAAGAAAAAGATAAAATGAGAAATCTGCAAAAGACAAGTGTAATCATTGTATTGGATATAAACAGTGTAGCTTGGGAGAAATTACAATGTACAACAATGAAGTAACATTGTGTTTGACTCGTTTTTAACACAATAGATAAAAATTTAATTGTAACACTATTTTTTTTTATACCTCGGTATTTGAAAGTTATATTAGATCATAACTAATTTGAG
>Glyma02g00610.1 sequence type=CDS gene model=Glyma02g00610 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAACCATCTCCTTTCTTGGGGAACGCAAGCTTTCATTCATGTCCATTTCTAAAGTTTAACGATAAGGTTGTAGAGCAACAACAGGATTCTCAAAAGGCCTCAAGTGCTAATGTTGATGGTGATGGTAATGCCAAAGTAAAGAGGAACAAATTAAAGGGGAAAAGAGCTGTTGTAAGATGGCTCAAGTTCTTTAGATTTAAGAAGAAGAAAGAGTATGAAAGGATGACAGCAGAGGAAAAAATTTTATACAAATTGTTAAAGGCTCGAAAAAAAGAAGAGAGACTTTGTGAAGCTCTGAAAAAGATTGAGCCTGCAGAATCTTCAGAAACAACCCATGATCCTGAGATATTAACCCCAGAAGAGCACTTTTTCTTCTTAAAGATGGGTCTCAAAAGCAAAAATTACGTGCCAGTTGGAAGACGAGGAATTTACCAAGGTGTAATTTTGAACATGCATCTGCATTGGAAAAAACATCAAACTTTGAAAGTGGTGGTGAAGACATTTTCAGCAGAGGAGGTTAAGGAGATTGCTACTGAACTGGCAAGATTGAGCGGAGGTATAGTGCTTGACATTCATGAAGATAACACAATAATAATGTACAGAGGGAAAAACTACTCTCAACCACCAACAGAGATCATGTCTCCACGAGTCTCTCTTTCAAGAAAGAAGGCATTGGATAAATCCAAATACAGGGATGCCCTCCGAGCTGTGAGGAGACATATTCCAAGGCTTGAACAAGAGCTTGAAATTCTTCGTGCTCAATTTAAAAGTTCAGCTGAAAGTAATACAGATGCTGCTGAGGCAATCCAGAACAGTGGCATAGAAAGTATTGAGTCTGGGAGTATCTCAAATTTCCAGCTACAGAATTCATATAAAGACCGTGAAAGGATGAATGATAACATTGGGTGCACAGAGGATGAGACAGATATGAACTCTGAATTGGATTCTGATTCGGATAAGTTATCAGATATATTTGAGACTGATTCAGATACTGAGAATTTCATAAAGGAGGAGAAACCTCTTTACTTGGATGAGTTTGATAATTTTCCAGAGCAAAGCGATGGAGAAATGAATGATTTTGAGGAGCATCTGCGACAAATGTCTCTGAAATCAAAAAACATGGAAAAGGAAGATAACTTACCTAAGTTGGACGAAGTTGACAAGATTTTTCTGCAAGCTACTTCCTTTTTAAAGAAAAAGATAAAATGA >Glyma02g00610.2 sequence type=CDS gene model=Glyma02g00610 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGTGGAAGCTTTTGGGAGCACGCCTTCTCTCCTCATATTCTTCTTCTTTGCTTCTCACACCCCTCTTATTTCGCAGCAAAATAAGCTTGGTTCGTGGCCAGGAACCTATTTTTGGGCACCTCTGTTACATGAAACCATCTCCTTTCTTGGGGAACGCAAGCTTTCATTCATGTCCATTTCTAAAGTTTAACGATAAGGTTGTAGAGCAACAACAGGATTCTCAAAAGGCCTCAAGTGCTAATGTTGATGGTGATGGTAATGCCAAAGTAAAGAGGAACAAATTAAAGGGGAAAAGAGCTGTTGTAAGATGGCTCAAGTTCTTTAGATTTAAGAAGAAGAAAGAGTATGAAAGGATGACAGCAGAGGAAAAAATTTTATACAAATTGTTAAAGGCTCGAAAAAAAGAAGAGAGACTTTGTGAAGCTCTGAAAAAGATTGAGCCTGCAGAATCTTCAGAAACAACCCATGATCCTGAGATATTAACCCCAGAAGAGCACTTTTTCTTCTTAAAGATGGGTCTCAAAAGCAAAAATTACGTGCCAGTTGGAAGACGAGGAATTTACCAAGGTGTAATTTTGAACATGCATCTGCATTGGAAAAAACATCAAACTTTGAAAGTGGTGGTGAAGACATTTTCAGCAGAGGAGGTTAAGGAGATTGCTACTGAACTGGCAAGATTGAGCGGAGGTATAGTGCTTGACATTCATGAAGATAACACAATAATAATGTACAGAGGGAAAAACTACTCTCAACCACCAACAGAGATCATGTCTCCACGAGTCTCTCTTTCAAGAAAGAAGGCATTGGATAAATCCAAATACAGGGATGCCCTCCGAGCTGTGAGGAGACATATTCCAAGGCTTGAACAAGAGCTTGAAATTCTTCGTGCTCAATTTAAAAGTTCAGCTGAAAGTAATACAGATGCTGCTGAGGCAATCCAGAACAGTGGCATAGAAAGTATTGAGTCTGGGAGTATCTCAAATTTCCAGCTACAGAATTCATATAAAGACCGTGAAAGGATGAATGATAACATTGGGTGCACAGAGGATGAGACAGATATGAACTCTGAATTGGATTCTGATTCGGATAAGTTATCAGATATATTTGAGACTGATTCAGATACTGAGAATTTCATAAAGGAGGAGAAACCTCTTTACTTGGATGAGTTTGATAATTTTCCAGAGCAAAGCGATGGAGAAATGAATGATTTTGAGGAGCATCTGCGACAAATGTCTCTGAAATCAAAAAACATGGAAAAGGAAGATAACTTACCTAAGTTGGACGAAGTTGACAAGATTTTTCTGCAAGCTACTTCCTTTTTAAAGAAAAAGATAAAATGA
>Glyma02g00610.1 sequence type=predicted peptide gene model=Glyma02g00610 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKPSPFLGNASFHSCPFLKFNDKVVEQQQDSQKASSANVDGDGNAKVKRNKLKGKRAVVRWLKFFRFKKKKEYERMTAEEKILYKLLKARKKEERLCEALKKIEPAESSETTHDPEILTPEEHFFFLKMGLKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFSAEEVKEIATELARLSGGIVLDIHEDNTIIMYRGKNYSQPPTEIMSPRVSLSRKKALDKSKYRDALRAVRRHIPRLEQELEILRAQFKSSAESNTDAAEAIQNSGIESIESGSISNFQLQNSYKDRERMNDNIGCTEDETDMNSELDSDSDKLSDIFETDSDTENFIKEEKPLYLDEFDNFPEQSDGEMNDFEEHLRQMSLKSKNMEKEDNLPKLDEVDKIFLQATSFLKKKIK* >Glyma02g00610.2 sequence type=predicted peptide gene model=Glyma02g00610 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVWKLLGARLLSSYSSSLLLTPLLFRSKISLVRGQEPIFGHLCYMKPSPFLGNASFHSCPFLKFNDKVVEQQQDSQKASSANVDGDGNAKVKRNKLKGKRAVVRWLKFFRFKKKKEYERMTAEEKILYKLLKARKKEERLCEALKKIEPAESSETTHDPEILTPEEHFFFLKMGLKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFSAEEVKEIATELARLSGGIVLDIHEDNTIIMYRGKNYSQPPTEIMSPRVSLSRKKALDKSKYRDALRAVRRHIPRLEQELEILRAQFKSSAESNTDAAEAIQNSGIESIESGSISNFQLQNSYKDRERMNDNIGCTEDETDMNSELDSDSDKLSDIFETDSDTENFIKEEKPLYLDEFDNFPEQSDGEMNDFEEHLRQMSLKSKNMEKEDNLPKLDEVDKIFLQATSFLKKKIK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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