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Report for Sequence Feature Glyma02g00550

Feature Type:gene_model
Chromosome:Gm02
Start:328488
stop:334936
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g00550
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G04430AT Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:1198860-1201301 FORWARD LENGTH=623 SoyBaseE_val: 0ISS
GO:0000271GO-bp Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process SoyBaseN/AISS
GO:0009825GO-bp Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth SoyBaseN/AISS
GO:0009932GO-bp Annotation by Michelle Graham. GO Biological Process: cell tip growth SoyBaseN/AISS
GO:0010817GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of hormone levels SoyBaseN/AISS
GO:0043481GO-bp Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light SoyBaseN/AISS
GO:0048767GO-bp Annotation by Michelle Graham. GO Biological Process: root hair elongation SoyBaseN/AISS
GO:0071555GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall organization SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0008168GO-mf Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity SoyBaseN/AISS
PTHR10108Panther METHYLTRANSFERASE JGI ISS
PTHR10108:SF58Panther DEHYDRATION-RESPONSIVE PROTEIN-RELATED JGI ISS
PF03141PFAM Putative methyltransferase JGI ISS
UniRef100_B9T5F0UniRef Annotation by Michelle Graham. Most informative UniRef hit: S-adenosylmethionine-dependent methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9T5F0_RICCO SoyBaseE_val: 0ISS
UniRef100_I1JB59UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JB59_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g00550
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g00550 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g002900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g00550
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g00550
>Glyma02g00550.1   sequence type=CDS   gene model=Glyma02g00550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGAGGGGAAGATCTGATGGATTGCAAAAGAAGCATTTAGTTGCTTCCGTTTGTGGTGTGGCAATCTTTCTTGGTTTTCTATATGTGTACCATGGATCCATCATTGGTTCTCAGAATAGTGGTTCGTCTGCACTTGAATATGGCAGCAAGTCATTGAAAAGACTTGGGGCATCATATTTGGGTGCAGATGATGATGCTGATAGCAAGCAAGATGAATCTTCATCAAGTATTATGCAGGGAGATGGTGAGGCTGATATTGTACCAAAGAGTTTCCCTGTTTGTGATGATCGTCATTCAGAGTTGATTCCCTGCTTAGACAGACATCTTATCTATCAAATGAGACTGAAGCTGGATCTTTCTTTGATGGAACACTATGAGAGACATTGTCCTCCTTCAGAAAGGAGATTTAATTGTTTGATTCCTCCTCCGGCAGGATACAAGATCCCTATTAAGTGGCCACAGAGCAGAGATGAGGTGTGGAAAGTAAATATTCCACACACTCACCTTGCACACGAGAAGTCTGACCAGAACTGGATGATTGTAAAAGGTGAAAAGATAGTGTTTCCTGGAGGAGGGACACATTTTCACTACGGAGCTGACAAGTACATTGCATCTATTGCAAATATGCTCAATTTTTCACACCATAATCTCAATAATGAAGGAAGACTGCGGACGGTTCTTGATGTTGGCTGCGGTGTTGCGAGTTTTGGAGCTTATCTTCTTTCATCTGATATCATCGCAATGTCCTTGGCGCCCAATGATGTGCATCAAAATCAAATTCAGTTTGCTCTAGAAAGAGGAATTCCTGCATATCTTGGTGTCTTGGGAACTAAGAGACTCCCTTACCCTAGCAGATCTTTTGAACTTGCGCACTGTTCTCGTTGCCGGATTGATTGGCTTCAAAGGGATGGAATACTACTCCTTGAGCTAGACCGGTTGCTTAGGCCAGGGGGTTACTTTGCATACTCATCTCCAGAAGCATATGCTCAGGATGAAGAGGATCGAAGGATTTGGAGAGAAATGAGTGCCCTTGTGGGACGTATGTGTTGGAGAATTGCTGCAAAGAAGGACCAAACTGTCATCTGGCAAAAACCTCTGACAAATGAATGCTATATGGAGAGAGAACCCGGCACTCGCCCTCCTCTTTGCCAGTCTGATGATGACCCAGATGCAGTTTTTGGAGTGAATATGGAAGCCTGCATAACACCTTACTCTGACCATGACAACAGAGCCAAGGGTAGTGGATTAGCTCCATGGCCTGCAAGATTGACCACTCCTCCTCCTAGATTAGCTGACTTTGGCTATTCAAATGAAATGTTTGAAAAGGATACGGAACTATGGCAAGGAAGAGTTGAGAATTACTGGAATCTATTGGGTCCAAAAATCTCGTCGAACACAGTGAGGAATGTGATGGACATGAAAGCAAACATGGGTTCATTTGCAGCTGCTCTTAAAGGAAAAGATGTTTGGGTGATGAATGTAGTACCTCGTGATGGGCCAAACACACTTAAGCTTGTATATGACAGAGGCCTCATAGGGTCTATCCATGACTGGTGTGAAGCATATTCAACATACCCCCGGACTTACGATTTACTCCATGCATGGACTGTGTTTTCTGACATTGAAACAAGAGGGTGCAGTAAAGAGGATCTATTGATTGAGATGGACCGTTTGCTTAGGCCTACAGGTTTCATCATCATAAGAGATAAACAGCATGTGATTGATTTTGTCAAGAAGTACCTAACAGCAATGCACTGGGAAGCAGTTGCAACTGCTGATGCTAGTGCTGACTCTGACCAAGATGGCAATGAAGTTATTTTTGTCATCCAGAAGAAATTGTGGCTCGCCACTGAAAGCCTTAGGAATACAGAATAG
Predicted protein sequences of Glyma02g00550
>Glyma02g00550.1   sequence type=predicted peptide   gene model=Glyma02g00550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTRGRSDGLQKKHLVASVCGVAIFLGFLYVYHGSIIGSQNSGSSALEYGSKSLKRLGASYLGADDDADSKQDESSSSIMQGDGEADIVPKSFPVCDDRHSELIPCLDRHLIYQMRLKLDLSLMEHYERHCPPSERRFNCLIPPPAGYKIPIKWPQSRDEVWKVNIPHTHLAHEKSDQNWMIVKGEKIVFPGGGTHFHYGADKYIASIANMLNFSHHNLNNEGRLRTVLDVGCGVASFGAYLLSSDIIAMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDRRIWREMSALVGRMCWRIAAKKDQTVIWQKPLTNECYMEREPGTRPPLCQSDDDPDAVFGVNMEACITPYSDHDNRAKGSGLAPWPARLTTPPPRLADFGYSNEMFEKDTELWQGRVENYWNLLGPKISSNTVRNVMDMKANMGSFAAALKGKDVWVMNVVPRDGPNTLKLVYDRGLIGSIHDWCEAYSTYPRTYDLLHAWTVFSDIETRGCSKEDLLIEMDRLLRPTGFIIIRDKQHVIDFVKKYLTAMHWEAVATADASADSDQDGNEVIFVIQKKLWLATESLRNTE*






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