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Report for Sequence Feature Glyma02g00540

Feature Type:gene_model
Chromosome:Gm02
Start:324558
stop:327440
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g00540
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G62870AT Annotation by Michelle Graham. TAIR10: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr3:23242862-23244273 REVERSE LENGTH=256 SoyBaseE_val: 5.00E-164ISS
GO:0001510GO-bp Annotation by Michelle Graham. GO Biological Process: RNA methylation SoyBaseN/AISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0042254GO-bp Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0022625GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit SoyBaseN/AISS
GO:0022626GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
KOG3166 KOG 60S ribosomal protein L7A JGI ISS
PTHR23105Panther 60S RIBOSOMAL PROTEIN L10A - RELATED JGI ISS
PTHR23105:SF1Panther 60S RIBOSOMAL PROTEIN L7A JGI ISS
PF01248PFAM Ribosomal protein L7Ae/L30e/S12e/Gadd45 family JGI ISS
UniRef100_I1JB58UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JB58_SOYBN SoyBaseE_val: 0ISS
UniRef100_P35685UniRef Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein L7a n=4 Tax=Oryza RepID=RL7A_ORYSJ SoyBaseE_val: 2.00E-163ISS

Expression Patterns of Glyma02g00540
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g00540 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g002800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g00540
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g00540
>Glyma02g00540.2   sequence type=CDS   gene model=Glyma02g00540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGCAGCAACAATGGGCCCGGCCCAAACCTGACCCGGCAACCCAATCTTTTAAATCGAGTTCCGAAGCCATATTCTCAGTCTCTAGGGTTTTTGATCGTTGTTGTTCTAAAGCACTCATCCACACATTCTCCGTCGCCACGACAACAATGGCTCCAAAGAAAGGTGCGAAAGGTGGAGTTGTAGCAGCAAAGAAGAAGGTTCAGGAGAAGGTAACGAACCCTTTGTTCGAGAAGCGTCCGAAGCAGTTCGGGATCGGAGGCGCGCTGCCGCCGAAGCGGGACCTGACGCGCTTCGTGAAGTGGCCGAAGAACGTCCAAATCCAACGCAAGAAGCGCATCCTCAAGCAGAGGCTCAAGGTCCCTCCGGCTCTCAACCAGTTCACCAAAACCCTCGACAAAAATCTCGCAACAAATCTTTTTAAAATGCTGCTGAAGTACAGGCCGGAGGACAAGGCGGAGAAGAAGGAGAGGCTGTTGAAGAGGGCTCAGGCTGAGGCTGATGGGAAACCTGTTGAGGCCAAGAAGCCTATTGTTGTCAAATATGGTCTCAACCACGTTACCTACCTTATTGAGCAGAACAAGGCACAACTGGTTGTGATTGCTCATGACGTGGACCCAATTGAGCTGGTAGTCTGGCTTCCAGCATTGTGCAGGAAGATGGAAATTCCATACTGCATTGTCAAGGGCAAAGCACGCTTGGGAACAATTGTCCACAAGAAAACTGCTTCAGTTTTGTGCTTGACAACTGTCAAGAATGAAGACAAGATGGAGTTCAGTAGAATCCTAGAAGCTATTAAGGCCAACTTCAATGACAAGTACGATGAATACAGAAAGAAGTGGGGTGGTGGAATCATGGGTTCGAAGTCCCAAGCCAAGACCAGGGCCAAGGAGAAGCTCCTTGCCAAGGAAGCAGCCCAAAGAATGAACTAG
Predicted protein sequences of Glyma02g00540
>Glyma02g00540.2   sequence type=predicted peptide   gene model=Glyma02g00540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQQQQWARPKPDPATQSFKSSSEAIFSVSRVFDRCCSKALIHTFSVATTTMAPKKGAKGGVVAAKKKVQEKVTNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKNVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATNLFKMLLKYRPEDKAEKKERLLKRAQAEADGKPVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGTIVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKTRAKEKLLAKEAAQRMN*






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