Glyma02g00540 - SoyBase

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Report for Sequence Feature Glyma02g00540

Feature Type:	gene_model
Chromosome:	Gm02
Start:	324558
stop:	327440
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g00540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G62870	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein \| chr3:23242862-23244273 REVERSE LENGTH=256	SoyBase	E_val: 5.00E-164	ISS
GO:0001510	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA methylation	SoyBase	N/A	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0042254	GO-bp	Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0022625	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit	SoyBase	N/A	ISS
GO:0022626	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG3166	KOG	60S ribosomal protein L7A	JGI		ISS
PTHR23105	Panther	60S RIBOSOMAL PROTEIN L10A - RELATED	JGI		ISS
PTHR23105:SF1	Panther	60S RIBOSOMAL PROTEIN L7A	JGI		ISS
PF01248	PFAM	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	JGI		ISS
UniRef100_I1JB58	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JB58_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_P35685	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein L7a n=4 Tax=Oryza RepID=RL7A_ORYSJ	SoyBase	E_val: 2.00E-163	ISS

Expression Patterns of Glyma02g00540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g00540 not represented in the dataset	Glyma02g00540 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g00540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g002800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g00540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g00540

Limit To All Plant Sequences

>Glyma02g00540.2   sequence type=CDS   gene model=Glyma02g00540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGCAGCAACAATGGGCCCGGCCCAAACCTGACCCGGCAACCCAATCTTTTAAATCGAGTTCCGAAGCCATATTCTCAGTCTCTAGGGTTTTTGATCGTTGTTGTTCTAAAGCACTCATCCACACATTCTCCGTCGCCACGACAACAATGGCTCCAAAGAAAGGTGCGAAAGGTGGAGTTGTAGCAGCAAAGAAGAAGGTTCAGGAGAAGGTAACGAACCCTTTGTTCGAGAAGCGTCCGAAGCAGTTCGGGATCGGAGGCGCGCTGCCGCCGAAGCGGGACCTGACGCGCTTCGTGAAGTGGCCGAAGAACGTCCAAATCCAACGCAAGAAGCGCATCCTCAAGCAGAGGCTCAAGGTCCCTCCGGCTCTCAACCAGTTCACCAAAACCCTCGACAAAAATCTCGCAACAAATCTTTTTAAAATGCTGCTGAAGTACAGGCCGGAGGACAAGGCGGAGAAGAAGGAGAGGCTGTTGAAGAGGGCTCAGGCTGAGGCTGATGGGAAACCTGTTGAGGCCAAGAAGCCTATTGTTGTCAAATATGGTCTCAACCACGTTACCTACCTTATTGAGCAGAACAAGGCACAACTGGTTGTGATTGCTCATGACGTGGACCCAATTGAGCTGGTAGTCTGGCTTCCAGCATTGTGCAGGAAGATGGAAATTCCATACTGCATTGTCAAGGGCAAAGCACGCTTGGGAACAATTGTCCACAAGAAAACTGCTTCAGTTTTGTGCTTGACAACTGTCAAGAATGAAGACAAGATGGAGTTCAGTAGAATCCTAGAAGCTATTAAGGCCAACTTCAATGACAAGTACGATGAATACAGAAAGAAGTGGGGTGGTGGAATCATGGGTTCGAAGTCCCAAGCCAAGACCAGGGCCAAGGAGAAGCTCCTTGCCAAGGAAGCAGCCCAAAGAATGAACTAG

Predicted protein sequences of Glyma02g00540

Limit To All Plant Sequences

>Glyma02g00540.2   sequence type=predicted peptide   gene model=Glyma02g00540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQQQQWARPKPDPATQSFKSSSEAIFSVSRVFDRCCSKALIHTFSVATTTMAPKKGAKGGVVAAKKKVQEKVTNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKNVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATNLFKMLLKYRPEDKAEKKERLLKRAQAEADGKPVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGTIVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKTRAKEKLLAKEAAQRMN*

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