Glyma02g00490 - SoyBase

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Report for Sequence Feature Glyma02g00490

Feature Type:	gene_model
Chromosome:	Gm02
Start:	271507
stop:	273421
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g00490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G36240	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein \| chr1:13614890-13616233 FORWARD LENGTH=112	SoyBase	E_val: 1.00E-69	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0022625	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG2988	KOG	60S ribosomal protein L30	JGI		ISS
PTHR11449	Panther	RIBOSOMAL PROTEIN L30	JGI		ISS
PF01248	PFAM	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	JGI		ISS
UniRef100_I1L7D4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L7D4_SOYBN	SoyBase	E_val: 1.00E-74	ISS
UniRef100_O49884	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein L30 n=1 Tax=Lupinus luteus RepID=RL30_LUPLU	SoyBase	E_val: 3.00E-74	ISS

Expression Patterns of Glyma02g00490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g00490

Paralog	Evidence	Comments
Glyma10g00500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g00490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g002300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g00490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g00490

Limit To All Plant Sequences

>Glyma02g00490.2   sequence type=transcript   gene model=Glyma02g00490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTGTAGTGGCAGACGCAGACGCCGTGACTAGACACTCATCTCACTCGCGCCATCTTAGGGTTTCTCCTTTTGTTTCGCAACATGGTTGCCGCTAAGAAAACTAAGAAGACCCATGAGAGCATCAACAACAGGCTCGCTCTTGTCATGAAGAGTGGCAAATTCACCCTCGGTTACAAGACCGTTCTCAAATCTCTTAGGAACTCCAAAGGAAAATTGATTATCATTGCTAACAACTGCCCCCCTTTGAGAAAGTCAGAGATTGAATACTATGCTATGTTGGCAAAGGTTGGAGTTCATCATTACAATGGGAGTAAGTTCTTAATCTTATGCTTTTCTTTCATTCTTATTCTTTTTTAATGTTAATATGAATTATATGATATGTGGAAAAATCTTCAGTTTCTGATTTATTTTATAGTTTTTGTAATCTGCCCCGCATGCATTTAACTCGGTTTCAGAGAAAGCAACATAATGCTTGAGTCAGTCATATGACTTGAATGTCCTGGATTAAAACCTGTAAACTGGTTTACTTGAACTTGGATTTTAAGCATTTGGTGATTAATTTCCTTTGTTGACGAATTTATATGATCTGCATTTATATTTTATTGTAGCTGATGCAAGTTTATAGCTATTAGTATTTTGATGGTTACACATGCAATATTGGTTGCTGAACTTGTATAAATTATTGCACTAACAAATGGATTGTATTTTAACTTATTGATGATAAT

>Glyma02g00490.3   sequence type=transcript   gene model=Glyma02g00490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTGTAGTGGCAGACGCAGACGCCGTGACTAGACACTCATCTCACTCGCGCCATCTTAGGGTTTCTCCTTTTGTTTCGCAACATGGTTGCCGCTAAGAAAACTAAGAAGACCCATGAGAGCATCAACAACAGGCTCGCTCTTGTCATGAAGAGTGGCAAATTCACCCTCGGTTACAAGACCGTTCTCAAATCTCTTAGGAACTCCAAAGGAAAATTGATTATCATTGCTAACAACTGCCCCCCTTTGAGAAAGTCAGAGATTGAATACTATGCTATGTTGGCAAAGGTTGGAGTTCATCATTACAATGGGAACAATGTGGATTTGGGCACTGCATGTGGAAAATATTACAGAGTGTGCTGCCTTAGCATTATTGATCCTGGTGATTCTGATATCATCAAGACACTGCCTGGCGACCAGTAAAGTAGTATTGAAGTTCCTTGCTTGATATTTTCTATTTTTAGTTGATTCCAGACATTGTTGAAAGAATATCTGATTAAGTTCTAGACTTTGGTGTAAGGTGCATGGTTTTTGGGTATTCTAGCTGAGCATCAAGTGTTTTTGACCTTGCAAATTTTTTCATGATGTTTCATTATGCCAATTTCTATAGAGATGATATAATTATAGTTTGATCACACGCTTGCTGTTAACAGCAAGCCCGTGTTATCCACTTTCGCTCGCAAATAGTTGTTGACATTGAATTTGCATGGTAAACCCCATAACTAAGAGCTTTAAATGGGTGGAAATTTTTTATATTCTGGAAAGCTTCTAGGCATGTCCATGAATTTGAAACAAGACTGTCATCCATGTATCTTGATGCAAATGGAAAAATCGAAAAGTCATACCTTGAAGGAGATTCCCTTTCTATTTTTTTGAAAATAAAACTTTGTTCAACTTAGTATTATAGTTTCGTAGTGGTGTCTGCAAATTTGGCATCAAGTCATTTGAGTGGTAGTTCTCATTTTGGGTTGTAAGGTTCAGCTAGCAAAATCAGATGTAGTTTTTGAAGTGGTGAATCATTGAAAGACTCCCGAGTTTTAAATCCTC

Coding sequences of Glyma02g00490

Limit To All Plant Sequences

>Glyma02g00490.1   sequence type=CDS   gene model=Glyma02g00490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGAAGAAGACCCATGAGAGCATCAACAACAGGCTCGCTCTTGTCATGAAGAGTGGCAAATTCACCCTCGGTTACAAGACCGTTCTCAAATCTCTTAGGAACTCCAAAGGAAAATTGATTATCATTGCTAACAACTGCCCCCCTTTGAGAAAGTCAGAGATTGAATACTATGCTATGTTGGCAAAGGTTGGAGTTCATCATTACAATGGGAACAATGTGGATTTGGGCACTGCATGTGGAAAATATTACAGAGTGTGCTGCCTTAGCATTATTGATCCTGGTGATTCTGATATCATCAAGACACTGCCTGGCGACCAGTAA

>Glyma02g00490.2   sequence type=CDS   gene model=Glyma02g00490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGCCGCTAAGAAAACTAAGAAGACCCATGAGAGCATCAACAACAGGCTCGCTCTTGTCATGAAGAGTGGCAAATTCACCCTCGGTTACAAGACCGTTCTCAAATCTCTTAGGAACTCCAAAGGAAAATTGATTATCATTGCTAACAACTGCCCCCCTTTGAGAAAGTCAGAGATTGAATACTATGCTATGTTGGCAAAGGTTGGAGTTCATCATTACAATGGGAGTAAGTTCTTAATCTTATGCTTTTCTTTCATTCTTATTCTTTTTTAA

>Glyma02g00490.3   sequence type=CDS   gene model=Glyma02g00490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGCCGCTAAGAAAACTAAGAAGACCCATGAGAGCATCAACAACAGGCTCGCTCTTGTCATGAAGAGTGGCAAATTCACCCTCGGTTACAAGACCGTTCTCAAATCTCTTAGGAACTCCAAAGGAAAATTGATTATCATTGCTAACAACTGCCCCCCTTTGAGAAAGTCAGAGATTGAATACTATGCTATGTTGGCAAAGGTTGGAGTTCATCATTACAATGGGAACAATGTGGATTTGGGCACTGCATGTGGAAAATATTACAGAGTGTGCTGCCTTAGCATTATTGATCCTGGTGATTCTGATATCATCAAGACACTGCCTGGCGACCAGTAA

Predicted protein sequences of Glyma02g00490

Limit To All Plant Sequences

>Glyma02g00490.1   sequence type=predicted peptide   gene model=Glyma02g00490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQKKTHESINNRLALVMKSGKFTLGYKTVLKSLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKTLPGDQ*

>Glyma02g00490.2   sequence type=predicted peptide   gene model=Glyma02g00490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKSLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSKFLILCFSFILILF*

>Glyma02g00490.3   sequence type=predicted peptide   gene model=Glyma02g00490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKSLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKTLPGDQ*

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